Literature DB >> 19275404

Water-mediated interactions between hydrophobic and ionic species in cylindrical nanopores.

S Vaitheeswaran1, G Reddy, D Thirumalai.   

Abstract

We use Metropolis Monte Carlo and umbrella sampling to calculate the free energies of interaction of two methane molecules and their charged derivatives in cylindrical water-filled pores. Confinement strongly alters the interactions between the nonpolar solutes and completely eliminates the solvent separated minimum (SSM) that is seen in bulk water. The free energy profiles show that the methane molecules are either in contact or at separations corresponding to the diameter and the length of the cylindrical pore. Analytic calculations that estimate the entropy of the solutes, which are solvated at the pore surface, qualitatively explain the shape of the free energy profiles. Adding charges of opposite sign and magnitude 0.4e or e (where e is the electronic charge) to the methane molecules decreases their tendency for surface solvation and restores the SSM. We show that confinement induced ion-pair formation occurs whenever l(B)/D approximately O(1), where l(B) is the Bjerrum length and D is the pore diameter. The extent of stabilization of the SSM increases with ion charge density as long as l(B)/D<1. In pores with D<or=1.2 nm, in which the water is strongly layered, increasing the charge magnitude from 0.4e to e reduces the stability of the SSM. As a result, ion-pair formation that occurs with negligible probability in the bulk is promoted. In larger diameter pores that can accommodate a complete hydration layer around the solutes, the stability of the SSM is enhanced.

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Year:  2009        PMID: 19275404      PMCID: PMC2736676          DOI: 10.1063/1.3080720

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  11 in total

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7.  Interactions between amino acid side chains in cylindrical hydrophobic nanopores with applications to peptide stability.

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8.  L-alanine in a droplet of water: a density-functional molecular dynamics study.

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9.  Hydrophobic and ionic interactions in nanosized water droplets.

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10.  Factors governing helix formation in peptides confined to carbon nanotubes.

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