Literature DB >> 19274630

Searching the Mouse Genome Informatics (MGI) resources for information on mouse biology from genotype to phenotype.

David R Shaw1.   

Abstract

The Mouse Genome Informatics (MGI) resource provides the research community with access to information on the genetics, genomics, and biology of the laboratory mouse. Core data in MGI include gene characterization and function, phenotype and disease model descriptions, DNA and protein sequence data, gene expression data, mammalian orthologies, SNPs and PCR polymorphisms, mapping data, and links to other bioinformatics databases. Data integration is supported through the use of standardized nomenclature, and through the use of controlled vocabularies such as the mouse Anatomical Dictionary, the Mammalian Phenotype Ontology, and the Gene Ontologies. MGI extracts and organizes data from primary literature. MGI data are shared with and widely displayed from other bioinformatics resources. The database is updated nightly with curated annotations, and regularly adds new datasets. This unit provides a guide to using the MGI bioinformatics resource. (c) 2009 by John Wiley & Sons, Inc.

Entities:  

Mesh:

Year:  2009        PMID: 19274630     DOI: 10.1002/0471250953.bi0107s25

Source DB:  PubMed          Journal:  Curr Protoc Bioinformatics        ISSN: 1934-3396


  15 in total

1.  Locus category based analysis of a large genome-wide association study of rheumatoid arthritis.

Authors:  Jan Freudenberg; Annette T Lee; Katherine A Siminovitch; Christopher I Amos; David Ballard; Wentian Li; Peter K Gregersen
Journal:  Hum Mol Genet       Date:  2010-07-16       Impact factor: 6.150

2.  A framework for comparing phenotype annotations of orthologous genes.

Authors:  Olivier Bodenreider; Anita Burgun
Journal:  Stud Health Technol Inform       Date:  2010

3.  Choosing a genome browser for a Model Organism Database: surveying the maize community.

Authors:  Taner Z Sen; Lisa C Harper; Mary L Schaeffer; Carson M Andorf; Trent E Seigfried; Darwin A Campbell; Carolyn J Lawrence
Journal:  Database (Oxford)       Date:  2010-07-06       Impact factor: 3.451

4.  Phenotypic overlap in the contribution of individual genes to CNV pathogenicity revealed by cross-species computational analysis of single-gene mutations in humans, mice and zebrafish.

Authors:  Sandra C Doelken; Sebastian Köhler; Christopher J Mungall; Georgios V Gkoutos; Barbara J Ruef; Cynthia Smith; Damian Smedley; Sebastian Bauer; Eva Klopocki; Paul N Schofield; Monte Westerfield; Peter N Robinson; Suzanna E Lewis
Journal:  Dis Model Mech       Date:  2012-10-25       Impact factor: 5.758

5.  Potential translational targets revealed by linking mouse grooming behavioral phenotypes to gene expression using public databases.

Authors:  Andrew Roth; Evan J Kyzar; Jonathan Cachat; Adam Michael Stewart; Jeremy Green; Siddharth Gaikwad; Timothy P O'Leary; Boris Tabakoff; Richard E Brown; Allan V Kalueff
Journal:  Prog Neuropsychopharmacol Biol Psychiatry       Date:  2012-10-31       Impact factor: 5.067

6.  Interconnected network motifs control podocyte morphology and kidney function.

Authors:  Evren U Azeloglu; Simon V Hardy; Narat John Eungdamrong; Yibang Chen; Gomathi Jayaraman; Peter Y Chuang; Wei Fang; Huabao Xiong; Susana R Neves; Mohit R Jain; Hong Li; Avi Ma'ayan; Ronald E Gordon; John Cijiang He; Ravi Iyengar
Journal:  Sci Signal       Date:  2014-02-04       Impact factor: 8.192

7.  BioMart: a data federation framework for large collaborative projects.

Authors:  Junjun Zhang; Syed Haider; Joachim Baran; Anthony Cros; Jonathan M Guberman; Jack Hsu; Yong Liang; Long Yao; Arek Kasprzyk
Journal:  Database (Oxford)       Date:  2011-09-19       Impact factor: 3.451

8.  Datgan, a reusable software system for facile interrogation and visualization of complex transcription profiling data.

Authors:  Gareth R Howell; David O Walton; Benjamin L King; Richard T Libby; Simon W M John
Journal:  BMC Genomics       Date:  2011-08-24       Impact factor: 3.969

Review 9.  Sjögren's syndrome: studying the disease in mice.

Authors:  Nicolas Delaleu; Cuong Q Nguyen; Ammon B Peck; Roland Jonsson
Journal:  Arthritis Res Ther       Date:  2011-06-13       Impact factor: 5.156

10.  BioMart Central Portal: an open database network for the biological community.

Authors:  Jonathan M Guberman; J Ai; O Arnaiz; Joachim Baran; Andrew Blake; Richard Baldock; Claude Chelala; David Croft; Anthony Cros; Rosalind J Cutts; A Di Génova; Simon Forbes; T Fujisawa; E Gadaleta; D M Goodstein; Gunes Gundem; Bernard Haggarty; Syed Haider; Matthew Hall; Todd Harris; Robin Haw; S Hu; Simon Hubbard; Jack Hsu; Vivek Iyer; Philip Jones; Toshiaki Katayama; R Kinsella; Lei Kong; Daniel Lawson; Yong Liang; Nuria Lopez-Bigas; J Luo; Michael Lush; Jeremy Mason; Francois Moreews; Nelson Ndegwa; Darren Oakley; Christian Perez-Llamas; Michael Primig; Elena Rivkin; S Rosanoff; Rebecca Shepherd; Reinhard Simon; B Skarnes; Damian Smedley; Linda Sperling; William Spooner; Peter Stevenson; Kevin Stone; J Teague; Jun Wang; Jianxin Wang; Brett Whitty; D T Wong; Marie Wong-Erasmus; L Yao; Ken Youens-Clark; Christina Yung; Junjun Zhang; Arek Kasprzyk
Journal:  Database (Oxford)       Date:  2011-09-18       Impact factor: 3.451

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.