Literature DB >> 19271186

Detection and quantitative assessment of horizontal gene transfer.

Olga Zhaxybayeva1.   

Abstract

This chapter discusses the pros and cons of the existing computational methods for the detection of horizontal (or lateral) gene transfer and highlights the genome-wide studies utilizing these methods. The impact of horizontal gene transfer (HGT) on prokaryote genome evolution is discussed.

Mesh：

Year:  2009        PMID： 19271186     DOI： 10.1007/978-1-60327-853-9_11

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN： 1064-3745


  9 in total

1.  The tangled past of eukaryotic enzymes involved in anaerobic metabolism.

Authors:  Vladimir Hampl; Courtney W Stairs; Andrew J Roger
Journal:  Mob Genet Elements       Date:  2011-05

Review 2.  Biased gene transfer in microbial evolution.

Authors:  Cheryl P Andam; J Peter Gogarten
Journal:  Nat Rev Microbiol       Date:  2011-06-13       Impact factor: 60.633

3.  Quantifying homologous replacement of loci between haloarchaeal species.

Authors:  David Williams; J Peter Gogarten; R Thane Papke
Journal:  Genome Biol Evol       Date:  2012       Impact factor: 3.416

Review 4.  Evolution of microbes and viruses: a paradigm shift in evolutionary biology?

Authors:  Eugene V Koonin; Yuri I Wolf
Journal:  Front Cell Infect Microbiol       Date:  2012-09-13       Impact factor: 5.293

5.  Complex evolutionary history of the Aeromonas veronii group revealed by host interaction and DNA sequence data.

Authors:  Adam C Silver; David Williams; Joshua Faucher; Amy J Horneman; J Peter Gogarten; Joerg Graf
Journal:  PLoS One       Date:  2011-02-16       Impact factor: 3.240

6.  A rooted net of life.

Authors:  David Williams; Gregory P Fournier; Pascal Lapierre; Kristen S Swithers; Anna G Green; Cheryl P Andam; J Peter Gogarten
Journal:  Biol Direct       Date:  2011-09-21       Impact factor: 4.540

7.  HGTector: an automated method facilitating genome-wide discovery of putative horizontal gene transfers.

Authors:  Qiyun Zhu; Michael Kosoy; Katharina Dittmar
Journal:  BMC Genomics       Date:  2014-08-26       Impact factor: 3.969

8.  Genomic Data Quality Impacts Automated Detection of Lateral Gene Transfer in Fungi.

Authors:  Pierre-Yves Dupont; Murray P Cox
Journal:  G3 (Bethesda)       Date:  2017-04-03       Impact factor: 3.154

9.  Improved gene tree error correction in the presence of horizontal gene transfer.

Authors:  Mukul S Bansal; Yi-Chieh Wu; Eric J Alm; Manolis Kellis
Journal:  Bioinformatics       Date:  2014-12-05       Impact factor: 6.937
  9 in total

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