Literature DB >> 19269963

Optimizing pH response of affinity between protein G and IgG Fc: how electrostatic modulations affect protein-protein interactions.

Hideki Watanabe1, Hiroyuki Matsumaru, Ayako Ooishi, Yanwen Feng, Takayuki Odahara, Kyoko Suto, Shinya Honda.   

Abstract

Protein-protein interaction in response to environmental conditions enables sophisticated biological and biotechnological processes. Aiming toward the rational design of a pH-sensitive protein-protein interaction, we engineered pH-sensitive mutants of streptococcal protein G B1, a binder to the IgG constant region. We systematically introduced histidine residues into the binding interface to cause electrostatic repulsion on the basis of a rigid body model. Exquisite pH sensitivity of this interaction was confirmed by surface plasmon resonance and affinity chromatography employing a clinically used human IgG. The pH-sensitive mechanism of the interaction was analyzed and evaluated from kinetic, thermodynamic, and structural viewpoints. Histidine-mediated electrostatic repulsion resulted in significant loss of exothermic heat of the binding that decreased the affinity only at acidic conditions, thereby improving the pH sensitivity. The reduced binding energy was partly recovered by "enthalpy-entropy compensation." Crystal structures of the designed mutants confirmed the validity of the rigid body model on which the effective electrostatic repulsion was based. Moreover, our data suggested that the entropy gain involved exclusion of water molecules solvated in a space formed by the introduced histidine and adjacent tryptophan residue. Our findings concerning the mechanism of histidine-introduced interactions will provide a guideline for the rational design of pH-sensitive protein-protein recognition.

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Year:  2009        PMID: 19269963      PMCID: PMC2673305          DOI: 10.1074/jbc.M809236200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  36 in total

1.  Dissection of the protein G B1 domain binding site for human IgG Fc fragment.

Authors:  D J Sloan; H W Hellinga
Journal:  Protein Sci       Date:  1999-08       Impact factor: 6.725

2.  Protein engineering of an IgG-binding domain allows milder elution conditions during affinity chromatography.

Authors:  S Gülich; M Uhlén; S Hober
Journal:  J Biotechnol       Date:  2000-01-21       Impact factor: 3.307

3.  Thermodynamics of a beta-hairpin structure: evidence for cooperative formation of folding nucleus.

Authors:  S Honda; N Kobayashi; E Munekata
Journal:  J Mol Biol       Date:  2000-01-14       Impact factor: 5.469

4.  Design of a pH-dependent cellulose-binding domain.

Authors:  M Linder; T Nevanen; T T Teeri
Journal:  FEBS Lett       Date:  1999-03-19       Impact factor: 4.124

5.  Novel computer program for fast exact calculation of accessible and molecular surface areas and average surface curvature.

Authors:  Oleg V Tsodikov; M Thomas Record; Yuri V Sergeev
Journal:  J Comput Chem       Date:  2002-04-30       Impact factor: 3.376

6.  Crystal structure at 2.8 A of an FcRn/heterodimeric Fc complex: mechanism of pH-dependent binding.

Authors:  W L Martin; A P West; L Gan; P J Bjorkman
Journal:  Mol Cell       Date:  2001-04       Impact factor: 17.970

7.  Conformation, pH-induced conformational changes, and thermal unfolding of anti-p24 (HIV-1) monoclonal antibody CB4-1 and its Fab and Fc fragments.

Authors:  K Welfle; R Misselwitz; G Hausdorf; W Höhne; H Welfle
Journal:  Biochim Biophys Acta       Date:  1999-04-12

8.  NMR structure reveals intramolecular regulation mechanism for pheromone binding and release.

Authors:  R Horst; F Damberger; P Luginbühl; P Güntert; G Peng; L Nikonova; W S Leal; K Wüthrich
Journal:  Proc Natl Acad Sci U S A       Date:  2001-11-27       Impact factor: 11.205

9.  pH dependence and stoichiometry of binding to the Fc region of IgG by the herpes simplex virus Fc receptor gE-gI.

Authors:  Elizabeth R Sprague; W Lance Martin; Pamela J Bjorkman
Journal:  J Biol Chem       Date:  2004-01-20       Impact factor: 5.157

10.  Introduction of histidine residues into avidin subunit interfaces allows pH-dependent regulation of quaternary structure and biotin binding.

Authors:  Henri R Nordlund; Vesa P Hytönen; Olli H Laitinen; Sanna T H Uotila; Einari A Niskanen; Janne Savolainen; Eevaleena Porkka; Markku S Kulomaa
Journal:  FEBS Lett       Date:  2003-12-18       Impact factor: 4.124

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  13 in total

1.  Computational design of a pH-sensitive IgG binding protein.

Authors:  Eva-Maria Strauch; Sarel J Fleishman; David Baker
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-31       Impact factor: 11.205

2.  A combinatorial histidine scanning library approach to engineer highly pH-dependent protein switches.

Authors:  Megan L Murtaugh; Sean W Fanning; Tressa M Sharma; Alexandra M Terry; James R Horn
Journal:  Protein Sci       Date:  2011-08-03       Impact factor: 6.725

3.  "De-novo" amino acid sequence elucidation of protein G'e by combined "top-down" and "bottom-up" mass spectrometry.

Authors:  Yelena Yefremova; Mahmoud Al-Majdoub; Kwabena F M Opuni; Cornelia Koy; Weidong Cui; Yuetian Yan; Michael L Gross; Michael O Glocker
Journal:  J Am Soc Mass Spectrom       Date:  2015-01-06       Impact factor: 3.109

4.  Design of pH sensitive binding proteins from the hyperthermophilic Sso7d scaffold.

Authors:  Nimish Gera; Andrew B Hill; Dalon P White; Ruben G Carbonell; Balaji M Rao
Journal:  PLoS One       Date:  2012-11-07       Impact factor: 3.240

5.  A Fab-Selective Immunoglobulin-Binding Domain from Streptococcal Protein G with Improved Half-Life Extension Properties.

Authors:  Felix Unverdorben; Meike Hutt; Oliver Seifert; Roland E Kontermann
Journal:  PLoS One       Date:  2015-10-02       Impact factor: 3.240

6.  Surface plasmon resonance biosensing of the monomer and the linked dimer of the variants of protein G under mass transport limitation.

Authors:  Hiroshi Imamura; Shinya Honda
Journal:  Data Brief       Date:  2016-11-05

7.  Ready-to-use protein G-conjugated gold nanorods for biosensing and biomedical applications.

Authors:  S Centi; F Ratto; F Tatini; S Lai; R Pini
Journal:  J Nanobiotechnology       Date:  2018-01-19       Impact factor: 10.435

Review 8.  Fc-Binding Ligands of Immunoglobulin G: An Overview of High Affinity Proteins and Peptides.

Authors:  Weonu Choe; Trishaladevi A Durgannavar; Sang J Chung
Journal:  Materials (Basel)       Date:  2016-12-08       Impact factor: 3.623

9.  A novel bioassay for the activity determination of therapeutic human brain natriuretic peptide (BNP).

Authors:  Lei Yu; Chunming Rao; Xinchang Shi; Yonghong Li; Kai Gao; Xuguang Li; Junzhi Wang
Journal:  PLoS One       Date:  2012-11-19       Impact factor: 3.240

10.  Engineered protein A ligands, derived from a histidine-scanning library, facilitate the affinity purification of IgG under mild acidic conditions.

Authors:  Masayuki Tsukamoto; Hideki Watanabe; Ayako Ooishi; Shinya Honda
Journal:  J Biol Eng       Date:  2014-07-01       Impact factor: 4.355

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