Literature DB >> 19269676

Lossy compression in diagnostic virtual 3-dimensional microscopy--where is the limit?

Thomas Kalinski1, Ralf Zwönitzer, Florian Grabellus, Sien-Yi Sheu, Saadettin Sel, Harald Hofmann, Johannes Bernarding, Albert Roessner.   

Abstract

Data compression is inevitable to reduce the huge data amounts of virtual slides, especially in virtual 3-dimensional (3D) microscopy. Lossy compression influences the image quality and leads to recognizable compression artifacts above a compression ratio of 20:1 in JPEG2000 format. To test out whether higher compression ratios are acceptable in diagnostic pathology, we prepared virtual 3D slides of gastric biopsy specimens with or without Helicobacter pylori gastritis using 5 different compression ratios as follows: 20:1, 40:1, 50:1, 75:1, and 200:1. The virtual 3D slides were diagnosed in a blinded manner by 3 pathologists according to the updated Sydney classification. The results showed no significant differences using virtual 3D slides with any compression of up to 200:1. We conclude that compression ratios higher than those commonly used can be applied in virtual microscopy, even in diagnostic applications.

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Year:  2009        PMID: 19269676     DOI: 10.1016/j.humpath.2008.12.010

Source DB:  PubMed          Journal:  Hum Pathol        ISSN: 0046-8177            Impact factor:   3.466


  2 in total

1.  [Pathowiki. A free expert database for pathology].

Authors:  M Rossner; F Rossner; R Zwönitzer; T Süss; H Hofmann; A Roessner; T Kalinski
Journal:  Pathologe       Date:  2012-03       Impact factor: 1.011

2.  Effect of image compression and scaling on automated scoring of immunohistochemical stainings and segmentation of tumor epithelium.

Authors:  Juho Konsti; Mikael Lundin; Nina Linder; Caj Haglund; Carl Blomqvist; Heli Nevanlinna; Kirsimari Aaltonen; Stig Nordling; Johan Lundin
Journal:  Diagn Pathol       Date:  2012-03-21       Impact factor: 2.644

  2 in total

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