Literature DB >> 19269364

Establishing the program of origin firing during S phase in fission Yeast.

Pei-Yun Jenny Wu1, Paul Nurse.   

Abstract

Initiation of eukaryotic DNA synthesis occurs at origins of replication that are utilized with characteristic times and frequencies during S phase. We have investigated origin usage by evaluating the kinetics of replication factor binding in fission yeast and show that similar to metazoa, ORC binding is periodic during the cell cycle, increasing during mitosis and peaking at M/G1. At an origin, the timing of ORC binding in M and pre-RC assembly in G1 correlates with the timing of firing during S, and the level of pre-IC formation reflects origin efficiency. Extending mitosis allows ORC to become more equally associated with origins and leads to genome-wide changes in origin usage, while overproduction of pre-IC factors increases replication of both efficient and inefficient origins. We propose that differential recruitment of ORC to origins during mitosis followed by competition among origins for limiting replication factors establishes the timing and efficiency of origin firing.

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Year:  2009        PMID: 19269364      PMCID: PMC2787407          DOI: 10.1016/j.cell.2009.01.017

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  56 in total

1.  The spatial position and replication timing of chromosomal domains are both established in early G1 phase.

Authors:  D S Dimitrova; D M Gilbert
Journal:  Mol Cell       Date:  1999-12       Impact factor: 17.970

2.  Cell cycle-dependent regulation of the association between origin recognition proteins and somatic cell chromatin.

Authors:  Wei-Hsin Sun; Thomas R Coleman; Melvin L DePamphilis
Journal:  EMBO J       Date:  2002-03-15       Impact factor: 11.598

3.  Stability, chromatin association and functional activity of mammalian pre-replication complex proteins during the cell cycle.

Authors:  Y Okuno; A J McNairn; N den Elzen; J Pines; D M Gilbert
Journal:  EMBO J       Date:  2001-08-01       Impact factor: 11.598

Review 4.  DNA replication in eukaryotic cells.

Authors:  Stephen P Bell; Anindya Dutta
Journal:  Annu Rev Biochem       Date:  2001-11-09       Impact factor: 23.643

5.  Histone acetylation regulates the time of replication origin firing.

Authors:  Maria Vogelauer; Liudmilla Rubbi; Isabelle Lucas; Bonita J Brewer; Michael Grunstein
Journal:  Mol Cell       Date:  2002-11       Impact factor: 17.970

6.  MCM2-7 complexes bind chromatin in a distributed pattern surrounding the origin recognition complex in Xenopus egg extracts.

Authors:  Melissa C Edwards; Antonin V Tutter; Christin Cvetic; Catherine H Gilbert; Tatyana A Prokhorova; Johannes C Walter
Journal:  J Biol Chem       Date:  2002-06-26       Impact factor: 5.157

7.  Multiple ORC-binding sites are required for efficient MCM loading and origin firing in fission yeast.

Authors:  Tatsuro Takahashi; Eri Ohara; Hideo Nishitani; Hisao Masukata
Journal:  EMBO J       Date:  2003-02-17       Impact factor: 11.598

8.  Mammalian Orc1 protein is selectively released from chromatin and ubiquitinated during the S-to-M transition in the cell division cycle.

Authors:  Cong-Jun Li; Melvin L DePamphilis
Journal:  Mol Cell Biol       Date:  2002-01       Impact factor: 4.272

9.  Completion of replication map of Saccharomyces cerevisiae chromosome III.

Authors:  A Poloumienko; A Dershowitz; J De; C S Newlon
Journal:  Mol Biol Cell       Date:  2001-11       Impact factor: 4.138

10.  Evidence that Swi/Snf directly represses transcription in S. cerevisiae.

Authors:  Joseph A Martens; Fred Winston
Journal:  Genes Dev       Date:  2002-09-01       Impact factor: 11.361

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  81 in total

1.  Mrc1 marks early-firing origins and coordinates timing and efficiency of initiation in fission yeast.

Authors:  Motoshi Hayano; Yutaka Kanoh; Seiji Matsumoto; Hisao Masai
Journal:  Mol Cell Biol       Date:  2011-04-25       Impact factor: 4.272

2.  Rif1 is a global regulator of timing of replication origin firing in fission yeast.

Authors:  Motoshi Hayano; Yutaka Kanoh; Seiji Matsumoto; Claire Renard-Guillet; Katsuhiko Shirahige; Hisao Masai
Journal:  Genes Dev       Date:  2012-01-15       Impact factor: 11.361

Review 3.  Regulation of DNA replication by chromatin structures: accessibility and recruitment.

Authors:  Makoto T Hayashi; Hisao Masukata
Journal:  Chromosoma       Date:  2010-08-03       Impact factor: 4.316

Review 4.  Eukaryotic DNA replication origins: many choices for appropriate answers.

Authors:  Marcel Méchali
Journal:  Nat Rev Mol Cell Biol       Date:  2010-10       Impact factor: 94.444

5.  Genome-wide identification and characterization of replication origins by deep sequencing.

Authors:  Jia Xu; Yoshimi Yanagisawa; Alexander M Tsankov; Christopher Hart; Keita Aoki; Naveen Kommajosyula; Kathleen E Steinmann; James Bochicchio; Carsten Russ; Aviv Regev; Oliver J Rando; Chad Nusbaum; Hironori Niki; Patrice Milos; Zhiping Weng; Nicholas Rhind
Journal:  Genome Biol       Date:  2012-04-24       Impact factor: 13.583

Review 6.  Helicase activation and establishment of replication forks at chromosomal origins of replication.

Authors:  Seiji Tanaka; Hiroyuki Araki
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-12-01       Impact factor: 10.005

Review 7.  [Regulation of DNA replication timing].

Authors:  T D Kolesnikova
Journal:  Mol Biol (Mosk)       Date:  2013 Jan-Feb

8.  Multi-step loading of human minichromosome maintenance proteins in live human cells.

Authors:  Ioanna-Eleni Symeonidou; Panagiotis Kotsantis; Vassilis Roukos; Maria-Anna Rapsomaniki; Hernán E Grecco; Philippe Bastiaens; Stavros Taraviras; Zoi Lygerou
Journal:  J Biol Chem       Date:  2013-10-24       Impact factor: 5.157

9.  Why are we where we are? Understanding replication origins and initiation sites in eukaryotes using ChIP-approaches.

Authors:  Aloys Schepers; Peer Papior
Journal:  Chromosome Res       Date:  2010-01       Impact factor: 5.239

10.  Mathematical modelling of DNA replication reveals a trade-off between coherence of origin activation and robustness against rereplication.

Authors:  Anneke Brümmer; Carlos Salazar; Vittoria Zinzalla; Lilia Alberghina; Thomas Höfer
Journal:  PLoS Comput Biol       Date:  2010-05-13       Impact factor: 4.475

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