Literature DB >> 19267428

Gas-phase IR spectroscopy of deprotonated amino acids.

Jos Oomens1, Jeffrey D Steill, Britta Redlich.   

Abstract

Gas-phase infrared multiple photon dissociation (IRMPD) spectra have been recorded for the conjugate bases of a series of amino acids (Asp, Cys, Glu, Phe, Ser, Trp, Tyr). The spectra are dominated by strong symmetric and antisymmetric carboxylate stretching modes around 1300 and 1600 cm(-1), respectively. Comparison of the experimental spectra with spectra calculated at the DFT level suggests a carboxylate structure for all species investigated, which is in contrast with what has recently been suggested in this journal for deprotonated cysteine [J. Am. Chem. Soc. 2007, 129, 5403-5407]. In addition, the IR spectrum of the conjugate base of tyrosine is also unambiguously that of a carboxylate ion and not that of a phenoxide ion. In sharp contrast with the conjugate bases of other amino acids investigated here, the aspartate and glutamate anions show very broad, hardly resolved spectral features. We present qualitative experimental evidence indicating that this can be attributed to the formation of a proton bridge between the backbone and side chain carboxylate groups. The large amplitude motion of this shared proton, coupling to virtually all other vibrational modes, causes extensive spectral broadening.

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 19267428     DOI: 10.1021/ja807615v

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  10 in total

1.  Elusive Intermediates in the Breakdown Reactivity Patterns of Prodrug Platinum(IV) Complexes.

Authors:  Davide Corinti; Maria Elisa Crestoni; Simonetta Fornarini; Fortuna Ponte; Nino Russo; Emilia Sicilia; Elisabetta Gabano; Domenico Osella
Journal:  J Am Soc Mass Spectrom       Date:  2019-04-12       Impact factor: 3.109

2.  The structure of deprotonated tri-alanine and its a3- fragment anion by IR spectroscopy.

Authors:  Jos Oomens; Jeffrey D Steill
Journal:  J Am Soc Mass Spectrom       Date:  2010-01-22       Impact factor: 3.109

3.  Structure of sodiated octa-glycine: IRMPD spectroscopy and molecular modeling.

Authors:  David Semrouni; O Petru Balaj; Florent Calvo; Catarina F Correia; Carine Clavaguéra; Gilles Ohanessian
Journal:  J Am Soc Mass Spectrom       Date:  2010-02-01       Impact factor: 3.109

4.  Spectroscopic evidence for an oxazolone structure in anionic b-type peptide fragments.

Authors:  Josipa Grzetic; Jos Oomens
Journal:  J Am Soc Mass Spectrom       Date:  2011-12-15       Impact factor: 3.109

5.  IRMPD Spectroscopy of Bare Monodeprotonated Genistein, an Antioxidant Flavonoid.

Authors:  Roberto Paciotti; Barbara Chiavarino; Cecilia Coletti; Debora Scuderi; Nazzareno Re; Davide Corinti; Lucretia Rotari; Simonetta Fornarini; Maria Elisa Crestoni
Journal:  ACS Omega       Date:  2022-05-30

6.  Infrared spectrum and structure of the homochiral serine octamer-dichloride complex.

Authors:  Jongcheol Seo; Stephan Warnke; Kevin Pagel; Michael T Bowers; Gert von Helden
Journal:  Nat Chem       Date:  2017-07-10       Impact factor: 24.427

Review 7.  Augmenting Basin-Hopping With Techniques From Unsupervised Machine Learning: Applications in Spectroscopy and Ion Mobility.

Authors:  Ce Zhou; Christian Ieritano; William Scott Hopkins
Journal:  Front Chem       Date:  2019-08-07       Impact factor: 5.221

8.  Infrared multiple photon dissociation (IRMPD) spectroscopy and its potential for the clinical laboratory.

Authors:  Matthew J Carlo; Amanda L Patrick
Journal:  J Mass Spectrom Adv Clin Lab       Date:  2021-12-14

Review 9.  Unraveling the unknown areas of the human metabolome: the role of infrared ion spectroscopy.

Authors:  Jonathan Martens; Giel Berden; Herman Bentlage; Karlien L M Coene; Udo F Engelke; David Wishart; Monique van Scherpenzeel; Leo A J Kluijtmans; Ron A Wevers; Jos Oomens
Journal:  J Inherit Metab Dis       Date:  2018-03-19       Impact factor: 4.982

10.  Shape of Testosterone.

Authors:  Iker León; Elena R Alonso; Santiago Mata; José L Alonso
Journal:  J Phys Chem Lett       Date:  2021-07-20       Impact factor: 6.475

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.