Literature DB >> 19267253

Prokaryotic and eukaryotic integral membrane proteins have similar architecture.

Rajneesh Kumar Gaur1, Girija Arun Natekar.   

Abstract

Integral membrane proteins constitute a major constituent of lipid bilayer both in prokaryotes and eukaryotes. The statistical analysis was carried out to determine the bias in amino acid distribution between prokaryotic and eukaryotic integral membrane proteins (pIntMPs and eIntMPs). Our results indicate that both pIntMPs and eIntMPs demonstrate the striking similarity in amino acid distribution in their transmembrane and extramembranous region. pIntMPs have relatively greater functional importance for Gly and Asn in comparison to eIntMPs.

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Year:  2009        PMID： 19267253     DOI： 10.1007/s11033-009-9497-3

Source DB:  PubMed          Journal:  Mol Biol Rep        ISSN： 0301-4851            Impact factor:   2.316


  19 in total

1.  Molecular mechanism of vectorial proton translocation by bacteriorhodopsin.

Authors:  S Subramaniam; R Henderson
Journal:  Nature       Date:  2000-08-10       Impact factor: 49.962

Review 2.  Stabilizing membrane proteins.

Authors:  J U Bowie
Journal:  Curr Opin Struct Biol       Date:  2001-08       Impact factor: 6.809

3.  The SWISS-PROT protein sequence data bank.

Authors:  A Bairoch; B Boeckmann
Journal:  Nucleic Acids Res       Date:  1991-04-25       Impact factor: 16.971

4.  Membrane protein structure prediction. Hydrophobicity analysis and the positive-inside rule.

Authors:  G von Heijne
Journal:  J Mol Biol       Date:  1992-05-20       Impact factor: 5.469

5.  Comparative analysis of amino acid distributions in integral membrane proteins from 107 genomes.

Authors:  Johan Nilsson; Bengt Persson; Gunnar von Heijne
Journal:  Proteins       Date:  2005-09-01

6.  The Protein Data Bank: a computer-based archival file for macromolecular structures.

Authors:  F C Bernstein; T F Koetzle; G J Williams; E F Meyer; M D Brice; J R Rodgers; O Kennard; T Shimanouchi; M Tasumi
Journal:  J Mol Biol       Date:  1977-05-25       Impact factor: 5.469

7.  Prediction of transmembrane alpha-helices in prokaryotic membrane proteins: the dense alignment surface method.

Authors:  M Cserzö; E Wallin; I Simon; G von Heijne; A Elofsson
Journal:  Protein Eng       Date:  1997-06

8.  Statistical analysis of amino acid patterns in transmembrane helices: the GxxxG motif occurs frequently and in association with beta-branched residues at neighboring positions.

Authors:  A Senes; M Gerstein; D M Engelman
Journal:  J Mol Biol       Date:  2000-02-25       Impact factor: 5.469

9.  Computational analysis of alpha-helical membrane protein structure: implications for the prediction of 3D structural models.

Authors:  Tina A Eyre; Linda Partridge; Janet M Thornton
Journal:  Protein Eng Des Sel       Date:  2004-09-23       Impact factor: 1.650

10.  PDB_TM: selection and membrane localization of transmembrane proteins in the protein data bank.

Authors:  Gábor E Tusnády; Zsuzsanna Dosztányi; István Simon
Journal:  Nucleic Acids Res       Date:  2005-01-01       Impact factor: 16.971
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  2 in total

1.  Membrane Protein Structures in Lipid Bilayers; Small-Angle Neutron Scattering With Contrast-Matched Bicontinuous Cubic Phases.

Authors:  Charlotte E Conn; Liliana de Campo; Andrew E Whitten; Christopher J Garvey; Anwen M Krause-Heuer; Leonie van 't Hag
Journal:  Front Chem       Date:  2021-02-09       Impact factor: 5.221

2.  Rhomboid homologs in mycobacteria: insights from phylogeny and genomic analysis.

Authors:  David P Kateete; Moses Okee; Fred A Katabazi; Alfred Okeng; Jeniffer Asiimwe; Henry W Boom; Kathleen D Eisenach; Moses L Joloba
Journal:  BMC Microbiol       Date:  2010-10-29       Impact factor: 3.605
  2 in total

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