Literature DB >> 19263099

Higher order multipole moments for molecular dynamics simulations.

Nuria Plattner1, Markus Meuwly.   

Abstract

In conventional force fields, the electrostatic potential is represented by atom-centred point charges. This choice is in principle arbitrary, but technically convenient. Point charges can be understood as the first term of multipole expansions, which converge with an increasing number of terms towards the accurate representation of the molecular potential given by the electron density distribution. The use of multipole expansions can therefore improve the force field accuracy. Technically, the implementation of atomic multipoles is more involved than the use of point charges. Important points to consider are the orientation of the multipole moments during the trajectory, conformational dependence of the atomic moments and stability of the simulations which are discussed here.

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Year:  2009        PMID: 19263099     DOI: 10.1007/s00894-009-0465-6

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  5 in total

1.  Distributed Multipole Analysis:  Stability for Large Basis Sets.

Authors:  Anthony J Stone
Journal:  J Chem Theory Comput       Date:  2005-11       Impact factor: 6.006

2.  Atomistic simulations of CO vibrations in ices relevant to astrochemistry.

Authors:  Nuria Plattner; Markus Meuwly
Journal:  Chemphyschem       Date:  2008-06-23       Impact factor: 3.102

3.  The role of higher CO-multipole moments in understanding the dynamics of photodissociated carbonmonoxide in myoglobin.

Authors:  Nuria Plattner; Markus Meuwly
Journal:  Biophys J       Date:  2008-01-04       Impact factor: 4.033

4.  Consistent treatment of inter- and intramolecular polarization in molecular mechanics calculations.

Authors:  Pengyu Ren; Jay W Ponder
Journal:  J Comput Chem       Date:  2002-12       Impact factor: 3.376

5.  All-atom empirical potential for molecular modeling and dynamics studies of proteins.

Authors:  A D MacKerell; D Bashford; M Bellott; R L Dunbrack; J D Evanseck; M J Field; S Fischer; J Gao; H Guo; S Ha; D Joseph-McCarthy; L Kuchnir; K Kuczera; F T Lau; C Mattos; S Michnick; T Ngo; D T Nguyen; B Prodhom; W E Reiher; B Roux; M Schlenkrich; J C Smith; R Stote; J Straub; M Watanabe; J Wiórkiewicz-Kuczera; D Yin; M Karplus
Journal:  J Phys Chem B       Date:  1998-04-30       Impact factor: 2.991

  5 in total
  3 in total

1.  Isotropic periodic sum for multipole interactions and a vector relation for calculation of the Cartesian multipole tensor.

Authors:  Xiongwu Wu; Frank C Pickard; Bernard R Brooks
Journal:  J Chem Phys       Date:  2016-10-28       Impact factor: 3.488

2.  Multipolar electrostatics based on the Kriging machine learning method: an application to serine.

Authors:  Yongna Yuan; Matthew J L Mills; Paul L A Popelier
Journal:  J Mol Model       Date:  2014-03-16       Impact factor: 1.810

3.  An efficient algorithm for multipole energies and derivatives based on spherical harmonics and extensions to particle mesh Ewald.

Authors:  Andrew C Simmonett; Frank C Pickard; Henry F Schaefer; Bernard R Brooks
Journal:  J Chem Phys       Date:  2014-05-14       Impact factor: 3.488

  3 in total

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