Literature DB >> 19261791

Interlaboratory reproducibility of a single-locus sequence-based method for strain typing of Aspergillus fumigatus.

S F Hurst1, S E Kidd, C O Morrissey, E Snelders, W J G Melchers, M V Castelli, E Mellado, K Simmon, C A Petti, S Richardson, S Zhang, A M Romanelli, B L Wickes, H A de Valk, C H W Klaassen, S Arunmozhi Balajee.   

Abstract

Seven international laboratories tested the recently proposed single-locus typing strategy for Aspergillus fumigatus subtyping for interlaboratory reproducibility. Comparative sequence analyses of portions of the locus AFUA_3G08990, encoding a putative cell surface protein (denoted CSP), was performed with a panel of Aspergillus isolates. Each laboratory followed very different protocols for extraction of DNA, PCR, and sequencing. Results revealed that the CSP typing method was a reproducible and portable strain typing method.

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Year:  2009        PMID： 19261791      PMCID： PMC2681842          DOI： 10.1128/JCM.00124-09

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  6 in total

1.  Use of a novel panel of nine short tandem repeats for exact and high-resolution fingerprinting of Aspergillus fumigatus isolates.

Authors:  Hanneke A de Valk; Jacques F G M Meis; Ilse M Curfs; Konrad Muehlethaler; Johan W Mouton; Corné H W Klaassen
Journal:  J Clin Microbiol       Date:  2005-08       Impact factor: 5.948

2.  Guidelines for the validation and application of typing methods for use in bacterial epidemiology.

Authors:  A van Belkum; P T Tassios; L Dijkshoorn; S Haeggman; B Cookson; N K Fry; V Fussing; J Green; E Feil; P Gerner-Smidt; S Brisse; M Struelens
Journal:  Clin Microbiol Infect       Date:  2007-10       Impact factor: 8.067

3.  Evaluation of performance of four genotypic methods for studying the genetic epidemiology of Aspergillus fumigatus isolates.

Authors:  Brent A Lasker
Journal:  J Clin Microbiol       Date:  2002-08       Impact factor: 5.948

4.  Characterization of a novel gene for strain typing reveals substructuring of Aspergillus fumigatus across North America.

Authors:  S Arunmozhi Balajee; Sun T Tay; Brent A Lasker; Steve F Hurst; Alejandro P Rooney
Journal:  Eukaryot Cell       Date:  2007-06-08

5.  Utility of a microsatellite assay for identifying clonally related outbreak isolates of Aspergillus fumigatus.

Authors:  S Arunmozhi Balajee; Hanneke A de Valk; Brent A Lasker; Jacques F G M Meis; Corné H W Klaassen
Journal:  J Microbiol Methods       Date:  2008-02-23       Impact factor: 2.363

6.  Interlaboratory reproducibility of a microsatellite-based typing assay for Aspergillus fumigatus through the use of allelic ladders: proof of concept.

Authors:  H A de Valk; J F G M Meis; S Bretagne; J-M Costa; B A Lasker; S A Balajee; A C Pasqualotto; M J Anderson; L Alcázar-Fuoli; E Mellado; C H W Klaassen
Journal:  Clin Microbiol Infect       Date:  2009-01-10       Impact factor: 8.067
  6 in total
  5 in total

1.  Molecular epidemiology of Aspergillus fumigatus isolates harboring the TR34/L98H azole resistance mechanism.

Authors:  Simone M T Camps; Antonius J M M Rijs; Corné H W Klaassen; Jacques F Meis; Céline M O'Gorman; Paul S Dyer; Willem J G Melchers; Paul E Verweij
Journal:  J Clin Microbiol       Date:  2012-06-06       Impact factor: 5.948

Review 2.  Investigating Clinical Issues by Genotyping of Medically Important Fungi: Why and How?

Authors:  Alexandre Alanio; Marie Desnos-Ollivier; Dea Garcia-Hermoso; Stéphane Bretagne
Journal:  Clin Microbiol Rev       Date:  2017-07       Impact factor: 26.132

3.  Quantitative Analysis of Single-Nucleotide Polymorphism for Rapid Detection of TR34/L98H- and TR46/Y121F/T289A-Positive Aspergillus fumigatus Isolates Obtained from Patients in Iran from 2010 to 2014.

Authors:  Faezeh Mohammadi; Seyed Jamal Hashemi; Jan Zoll; Willem J G Melchers; Haleh Rafati; Parvin Dehghan; Sasan Rezaie; Ali Tolooe; Yalda Tamadon; Henrich A van der Lee; Paul E Verweij; Seyedmojtaba Seyedmousavi
Journal:  Antimicrob Agents Chemother       Date:  2015-11-02       Impact factor: 5.191

4.  Phylogenetic Distribution of csp1 Types in Aspergillus fumigatus and Their Correlates to Azole Antifungal Drug Resistance.

Authors:  Oliver Bader
Journal:  Microbiol Spectr       Date:  2021-11-17

5.  Double-stranded RNA mycovirus infection of Aspergillus fumigatus is not dependent on the genetic make-up of the host.

Authors:  Jeannine M Refos; Alieke G Vonk; Kimberly Eadie; Jerome R Lo-Ten-Foe; Henri A Verbrugh; Anne D van Diepeningen; Wendy W J van de Sande
Journal:  PLoS One       Date:  2013-10-22       Impact factor: 3.240
  5 in total

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