| Literature DB >> 19261717 |
Francesco Piva1, Matteo Giulietti, Linda Nocchi, Giovanni Principato.
Abstract
UNLABELLED: The correct post-transcriptional RNA processing is finely regulated by RNA-binding proteins. Unfortunately, there is little experimental information on target RNA sequences of RNA-binding proteins and moreover such experimentally derived target sequences are annotated in a compact form by the score matrices that overestimate the number of possible recognized sequences. We carried out an exhaustive hand curated literature search to create a database, SpliceAid, collecting all the experimentally assessed target RNA sequences that are bound by splicing proteins in humans. We built a web resource, database driven, to easy query SpliceAid and give back the results by an accurate and dynamic graphic representation. AVAILABILITY: SpliceAid database is freely accessible at http://www.introni.it/splicing.html.Entities:
Mesh：
Substances：
Year: 2009 PMID： 19261717 DOI： 10.1093/bioinformatics/btp124
Source DB: PubMed Journal: Bioinformatics ISSN： 1367-4803 Impact factor: 6.937