Literature DB >> 19261267

Numerical characterization of DNA sequences based on digital signal method.

Zhao-Hui Qi1, Xiao-Qin Qi.   

Abstract

Based on digital signal method, we propose a new representation of DNA primary sequence. The representation can completely avoid loss of information in the transfer of data from a DNA sequence to its mathematical representation. Afterwards, we suggest one such approach to reach quantification of similarities based on digital signal similarity theory. The examination of similarities/dissimilarities among the coding sequences of the first exon of beta-globin gene of 11 species shows the utility of the scheme.

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Year:  2009        PMID: 19261267     DOI: 10.1016/j.compbiomed.2009.01.009

Source DB:  PubMed          Journal:  Comput Biol Med        ISSN: 0010-4825            Impact factor:   4.589


  5 in total

1.  Numerical characterization of DNA sequence based on dinucleotides.

Authors:  Xingqin Qi; Edgar Fuller; Qin Wu; Cun-Quan Zhang
Journal:  ScientificWorldJournal       Date:  2012-04-24

2.  Effective Encoding for DNA Sequence Visualization Based on Nucleotide's Ring Structure.

Authors:  A T M Golam Bari; Mst Rokeya Reaz; A K M Tauhidul Islam; Ho-Jin Choi; Byeong-Soo Jeong
Journal:  Evol Bioinform Online       Date:  2013-07-07       Impact factor: 1.625

3.  New method for global alignment of 2 DNA sequences by the tree data structure.

Authors:  Zhao-Hui Qi; Xiao-Qin Qi; Chen-Chen Liu
Journal:  J Theor Biol       Date:  2009-12-16       Impact factor: 2.691

4.  Self-similarity analysis of eubacteria genome based on weighted graph.

Authors:  Zhao-Hui Qi; Ling Li; Zhi-Meng Zhang; Xiao-Qin Qi
Journal:  J Theor Biol       Date:  2011-04-08       Impact factor: 2.691

5.  Classification analysis of dual nucleotides using dimension reduction.

Authors:  Zhao-Hui Qi; Jian-Min Wang; Xiao-Qin Qi
Journal:  J Theor Biol       Date:  2009-05-27       Impact factor: 2.691

  5 in total

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