Literature DB >> 19258351

Illoura: a software tool for analysis, visualization and semantic querying of cellular and other spatial biological data.

Tim McComb1, Oliver Cairncross, Andrew B Noske, David L A Wood, Brad J Marsh, Mark A Ragan.   

Abstract

UNLABELLED: New high-resolution approaches for mapping ultrastructure of cells in 3D are leading to unprecedented quantities of spatial data. Here we present Illoura, a software tool for the integrated management, analysis and visualization of these data within a semantic context, and illustrate its capability by analysis of spatial relationships in mammalian beta cells. AVAILABILITY: http://www.visiblecell.com/illoura. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.

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Year:  2009        PMID： 19258351      PMCID： PMC2672631          DOI： 10.1093/bioinformatics/btp125

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  6 in total

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Review 2.  Computational cell biology: spatiotemporal simulation of cellular events.

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4.  Expedited approaches to whole cell electron tomography and organelle mark-up in situ in high-pressure frozen pancreatic islets.

Authors:  Andrew B Noske; Adam J Costin; Garry P Morgan; Brad J Marsh
Journal:  J Struct Biol       Date:  2007-09-29       Impact factor: 2.867

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Authors:  J R Kremer; D N Mastronarde; J R McIntosh
Journal:  J Struct Biol       Date:  1996 Jan-Feb       Impact factor: 2.867

6.  SRS: information retrieval system for molecular biology data banks.

Authors:  T Etzold; A Ulyanov; P Argos
Journal:  Methods Enzymol       Date:  1996       Impact factor: 1.600
  6 in total
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Review 2.  Electron tomography in life science.

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Journal:  Semin Cell Dev Biol       Date:  2009-08-05       Impact factor: 7.727

Review 3.  Visualizing genome and systems biology: technologies, tools, implementation techniques and trends, past, present and future.

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Journal:  Gigascience       Date:  2015-08-25       Impact factor: 6.524

Review 4.  Visualizing time-related data in biology, a review.

Authors:  Maria Secrier; Reinhard Schneider
Journal:  Brief Bioinform       Date:  2013-04-12       Impact factor: 11.622
  4 in total

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