Literature DB >> 19257069

Subdiffusion and lateral diffusion coefficient of lipid atoms and molecules in phospholipid bilayers.

Elijah Flenner1, Jhuma Das, Maikel C Rheinstädter, Ioan Kosztin.   

Abstract

We use a long, all-atom molecular-dynamics (MD) simulation combined with theoretical modeling to investigate the dynamics of selected lipid atoms and lipid molecules in a hydrated diyristoyl-phosphatidylcholine lipid bilayer. From the analysis of a 0.1 micros MD trajectory, we find that the time evolution of the mean-square displacement, <[deltar(t)]2>, of lipid atoms and molecules exhibits three well-separated dynamical regions: (i) ballistic, with <[deltar(t)]2> approximately t2 for t<or approximately 10 fs; (ii) subdiffusive, with <[deltar(t)]2> approximately tbeta with beta<1 for 10 ps<or approximately t<or approximately 10 ns; and (iii) Fickian diffusion, with <[deltar(t)]2> approximately t for t>or approximately 30 ns. We propose a memory-function approach for calculating <[deltar(t)]2> over the entire time range extending from the ballistic to the Fickian diffusion regimes. The results are in very good agreement with the ones from the MD simulations. We also examine the implications of the presence of the subdiffusive dynamics of lipids on the self-intermediate scattering function and the incoherent dynamic structure factor measured in neutron-scattering experiments.

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Year:  2009        PMID: 19257069     DOI: 10.1103/PhysRevE.79.011907

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  20 in total

1.  Strong influence of periodic boundary conditions on lateral diffusion in lipid bilayer membranes.

Authors:  Brian A Camley; Michael G Lerner; Richard W Pastor; Frank L H Brown
Journal:  J Chem Phys       Date:  2015-12-28       Impact factor: 3.488

2.  Dynamics measured by neutron scattering correlates with the organization of bioenergetics complexes in natural membranes from hyperthermophile and mesophile bacteria.

Authors:  J Peters; M T Giudici-Orticoni; G Zaccai; M Guiral
Journal:  Eur Phys J E Soft Matter       Date:  2013-07-17       Impact factor: 1.890

3.  Anomalous surface diffusion of protons on lipid membranes.

Authors:  Maarten G Wolf; Helmut Grubmüller; Gerrit Groenhof
Journal:  Biophys J       Date:  2014-07-01       Impact factor: 4.033

4.  Influence of charge density on bilayer bending rigidity in lipid vesicles: a combined dynamic light scattering and neutron spin-echo study.

Authors:  B Brüning; R Stehle; P Falus; B Farago
Journal:  Eur Phys J E Soft Matter       Date:  2013-07-17       Impact factor: 1.890

5.  Simulation Best Practices for Lipid Membranes [Article v1.0].

Authors:  David J Smith; Jeffery B Klauda; Alexander J Sodt
Journal:  Living J Comput Mol Sci       Date:  2019-01-09

6.  Structure and dynamics of liposomes designed for drug delivery: coarse-grained molecular dynamics simulations to reveal the role of lipopolymer incorporation.

Authors:  Mohammed Lemaalem; Nourddine Hadrioui; Abdelali Derouiche; Hamid Ridouane
Journal:  RSC Adv       Date:  2020-01-22       Impact factor: 4.036

7.  Subdiffusion in Membrane Permeation of Small Molecules.

Authors:  Christophe Chipot; Jeffrey Comer
Journal:  Sci Rep       Date:  2016-11-02       Impact factor: 4.379

8.  Reduced lateral mobility of lipids and proteins in crowded membranes.

Authors:  Joseph E Goose; Mark S P Sansom
Journal:  PLoS Comput Biol       Date:  2013-04-11       Impact factor: 4.779

9.  Anomalous Dynamics of a Lipid Recognition Protein on a Membrane Surface.

Authors:  Eiji Yamamoto; Antreas C Kalli; Takuma Akimoto; Kenji Yasuoka; Mark S P Sansom
Journal:  Sci Rep       Date:  2015-12-14       Impact factor: 4.379

10.  Improved Coarse-Grained Modeling of Cholesterol-Containing Lipid Bilayers.

Authors:  Michael D Daily; Brett N Olsen; Paul H Schlesinger; Daniel S Ory; Nathan A Baker
Journal:  J Chem Theory Comput       Date:  2014-05-13       Impact factor: 6.006

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