Literature DB >> 19256874

Strength limit of entropic elasticity in beta-sheet protein domains.

Sinan Keten1, Markus J Buehler.   

Abstract

Elasticity and strength of individual beta-sheet protein domains govern key biological functions and the mechanical properties of biopolymers including spider silk, amyloids, and muscle fibers. The worm-like-chain (WLC) model is commonly used to describe the entropic elasticity of polypeptides and other biomolecules. However, force spectroscopy experiments have shown pronounced deviations from the ideal WLC behavior, leading to controversial views about the appropriate elastic description of proteins at nanoscale. Here we report a simple model that explains the physical mechanism that leads to the breakdown of the WLC idealization in experiments by using only two generic parameters of the protein domain, the H-bond energy and the protein backbone's persistence length. We show that a rupture initiation condition characterized by the free energy release rate of H-bonds characterizes the limit of WLC entropic elasticity of beta-sheet protein domains and the onset of rupture. Our findings reveal that strength and elasticity are coupled and cannot be treated separately. The predictions of the model are compared with atomic force microscopy experiments of protein rupture.

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Year:  2008        PMID: 19256874     DOI: 10.1103/PhysRevE.78.061913

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  6 in total

1.  How protein materials balance strength, robustness, and adaptability.

Authors:  Markus J Buehler; Yu Ching Yung
Journal:  HFSP J       Date:  2010-01-14

2.  Tertiary and secondary structure elasticity of a six-Ig titin chain.

Authors:  Eric H Lee; Jen Hsin; Eleonore von Castelmur; Olga Mayans; Klaus Schulten
Journal:  Biophys J       Date:  2010-03-17       Impact factor: 4.033

Review 3.  Deformation and failure of protein materials in physiologically extreme conditions and disease.

Authors:  Markus J Buehler; Yu Ching Yung
Journal:  Nat Mater       Date:  2009-03       Impact factor: 43.841

4.  Bond energy effects on strength, cooperativity and robustness of molecular structures.

Authors:  Chia-Ching Chou; Markus J Buehler
Journal:  Interface Focus       Date:  2011-07-27       Impact factor: 3.906

5.  Nanoconfinement controls stiffness, strength and mechanical toughness of beta-sheet crystals in silk.

Authors:  Sinan Keten; Zhiping Xu; Britni Ihle; Markus J Buehler
Journal:  Nat Mater       Date:  2010-03-14       Impact factor: 43.841

6.  Crumpling Damaged Graphene.

Authors:  I Giordanelli; M Mendoza; J S Andrade; M A F Gomes; H J Herrmann
Journal:  Sci Rep       Date:  2016-05-13       Impact factor: 4.379

  6 in total

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