Literature DB >> 19256491

Changes in binding motif of protonated heterodimers containing valine and amines investigated using IRMPD spectroscopy between 800 and 3700 cm(-1) and theory.

Jeremy T O'Brien1, James S Prell, Jeffrey D Steill, Jos Oomens, Evan R Williams.   

Abstract

Proton-bound dimers consisting of valine and basic primary and secondary amines of varying gas-phase basicity (GB) were investigated using infrared multiple photon dissociation (IRMPD) spectroscopy between 800 and 3700 cm(-1), collisionally activated dissociation, and theory. The low-energy dissociation of these dimers results in a sharp transition from formation of primarily protonated valine to protonated base for dimers with ethylamine and propylamine, respectively, from which a GB of approximately 880 kJ/mol is deduced for valine, a value that is slightly higher than previously reported. The IRMPD spectra clearly indicate that, for bases with GB values within 20 kJ/mol of that of valine, the base coordinates to the N-terminus of a nonzwitterionic form of valine. In contrast, calculations indicate that valine is zwitterionic for complexes where the base is less basic. For bases with GB values at least 20 kJ/mol greater than that of valine, the spectra indicate a transition in structure, and for diethylamine (DeltaGB = 40 kJ/mol), the dominant structure is one in which the base coordinates to the carbonyl oxygen of a nonzwitterionic form of valine and the carboxylic acid donates an intramolecular hydrogen bond to the N-terminus. These results are consistent with the destabilization of the N-terminally coordinated structure due to the increasing difference in proton affinities of the constituent molecules and the increasing importance of a stabililizing hydrogen bond formed in the C-terminally coordinated structure. Even when the GB of the base is 40 kJ/mol higher than that of valine, the form of the amino acid is nonzwitterionic, indicating that careful application of the kinetic method should provide reliable information about the basicity of valine and other aliphatic amino acids.

Entities:  

Year:  2009        PMID: 19256491     DOI: 10.1021/ja809928h

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  5 in total

1.  Experimental and theoretical investigation of the proton-bound dimer of lysine.

Authors:  Ronghu Wu; Richard A Marta; Jonathan K Martens; Kris R Eldridge; Terry B McMahon
Journal:  J Am Soc Mass Spectrom       Date:  2011-06-22       Impact factor: 3.109

2.  IRPD spectroscopy and ensemble measurements: effects of different data acquisition and analysis methods.

Authors:  James S Prell; Jeremy T O'Brien; Evan R Williams
Journal:  J Am Soc Mass Spectrom       Date:  2010-01-25       Impact factor: 3.109

3.  Gas-Phase Protonation Thermodynamics of Biological Lipids: Experiment, Theory, and Implications.

Authors:  Zachary M Miller; J Diana Zhang; W Alexander Donald; James S Prell
Journal:  Anal Chem       Date:  2020-07-19       Impact factor: 6.986

4.  Infrared Multiple Photon Dissociation Spectroscopy of Cationized Canavanine: Side-Chain Substitution Influences Gas-Phase Zwitterion Formation.

Authors:  Zachary M Smith; Vincent Steinmetz; Jonathan Martens; Jos Oomens; John C Poutsma
Journal:  Int J Mass Spectrom       Date:  2017-09-04       Impact factor: 1.986

5.  Unfolding and Folding of the Three-Helix Bundle Protein KIX in the Absence of Solvent.

Authors:  Moritz Schennach; Eva-Maria Schneeberger; Kathrin Breuker
Journal:  J Am Soc Mass Spectrom       Date:  2016-03-02       Impact factor: 3.109

  5 in total

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