Literature DB >> 19255484

Preliminary X-ray crystallographic studies of Bacillus subtilis SpeA protein.

Xiao Yan Liu1, Jian Lei, Xiang Liu, Xiao Dong Su, Lanfen Li.   

Abstract

The speA gene in Bacillus subtilis encodes arginine decarboxylase, which catalyzes the conversion of arginine to agmatine. Arginine decarboxylase is an important enzyme in polyamine metabolism in B. subtilis. In order to further illustrate the catalytic mechanism of arginine decarboxylase by determining the three-dimensional structure of the enzyme, the speA gene was amplified from B. subtilis genomic DNA and cloned into the expression vector pET-28a(+). SpeA was expressed in Escherichia coli and purified to homogeneity by nickel-chelation chromatography followed by size-exclusion chromatography. High-quality crystals were obtained using the hanging-drop vapour-diffusion method at 289 K. The best crystal diffracted to 2.0 A resolution and belonged to space group P2(1), with unit-cell parameters a = 86.4, b = 63.3 c = 103.3 A, beta = 113.9 degrees .

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Year:  2009        PMID: 19255484      PMCID: PMC2650450          DOI: 10.1107/S1744309109003856

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  14 in total

1.  Methanococcus jannaschii uses a pyruvoyl-dependent arginine decarboxylase in polyamine biosynthesis.

Authors:  David E Graham; Huimin Xu; Robert H White
Journal:  J Biol Chem       Date:  2002-04-29       Impact factor: 5.157

2.  The production of amines by bacteria: The decarboxylation of amino-acids by strains of Bacterium coli.

Authors:  E F Gale
Journal:  Biochem J       Date:  1940-03       Impact factor: 3.857

3.  X-ray structure of Paramecium bursaria Chlorella virus arginine decarboxylase: insight into the structural basis for substrate specificity.

Authors:  Rahul Shah; Radha Akella; Elizabeth J Goldsmith; Margaret A Phillips
Journal:  Biochemistry       Date:  2007-02-17       Impact factor: 3.162

4.  Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase.

Authors:  R K Saiki; D H Gelfand; S Stoffel; S J Scharf; R Higuchi; G T Horn; K B Mullis; H A Erlich
Journal:  Science       Date:  1988-01-29       Impact factor: 47.728

5.  Biosynthetic arginine decarboxylase from Escherichia coli. Purification and properties.

Authors:  W H Wu; D R Morris
Journal:  J Biol Chem       Date:  1973-03-10       Impact factor: 5.157

6.  Argenine decarboxylase from Escherichia coli. I. Purification and specificity for substrates and coenzyme.

Authors:  S L Blethen; E A Boeker; E E Snell
Journal:  J Biol Chem       Date:  1968-04-25       Impact factor: 5.157

7.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

8.  Multiple pathways of putrescine biosynthesis in Escherichia coli.

Authors:  D R Morris; A B Pardee
Journal:  J Biol Chem       Date:  1966-07-10       Impact factor: 5.157

9.  Characterization of polyamine synthesis pathway in Bacillus subtilis 168.

Authors:  A Sekowska; P Bertin; A Danchin
Journal:  Mol Microbiol       Date:  1998-08       Impact factor: 3.501

10.  Crystallographic structure of a PLP-dependent ornithine decarboxylase from Lactobacillus 30a to 3.0 A resolution.

Authors:  C Momany; S Ernst; R Ghosh; N L Chang; M L Hackert
Journal:  J Mol Biol       Date:  1995-10-06       Impact factor: 5.469

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  2 in total

1.  Evolution of substrate specificity within a diverse family of beta/alpha-barrel-fold basic amino acid decarboxylases: X-ray structure determination of enzymes with specificity for L-arginine and carboxynorspermidine.

Authors:  Xiaoyi Deng; Jeongmi Lee; Anthony J Michael; Diana R Tomchick; Elizabeth J Goldsmith; Margaret A Phillips
Journal:  J Biol Chem       Date:  2010-06-08       Impact factor: 5.157

2.  Structures of bacterial biosynthetic arginine decarboxylases.

Authors:  Farhad Forouhar; Scott Lew; Jayaraman Seetharaman; Rong Xiao; Thomas B Acton; Gaetano T Montelione; Liang Tong
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-11-16
  2 in total

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