Literature DB >> 19251896

Effect of freezing on PCR amplification of 16S rRNA genes from microbes associated with black band disease of corals.

Raju Sekar1, Longin T Kaczmarsky, Laurie L Richardson.   

Abstract

Molecular analysis of black band disease of corals revealed that samples frozen immediately after collection yielded more proteobacterial 16S rRNA sequences, while unfrozen samples produced more cyanobacterial and sulfur-oxidizing bacterial sequences. These results suggest the need to use multiple approaches for preparation of samples to characterize this complex polymicrobial disease.

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Year:  2009        PMID： 19251896      PMCID： PMC2675240          DOI： 10.1128/AEM.01500-08

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  20 in total

1.  Partitioning of bacterial communities between seawater and healthy, black band diseased, and dead coral surfaces.

Authors:  Jorge Frias-Lopez; Aubrey L Zerkle; George T Bonheyo; Bruce W Fouke
Journal:  Appl Environ Microbiol       Date:  2002-05       Impact factor: 4.792

2.  Cyanobacteria associated with coral black band disease in Caribbean and Indo-Pacific Reefs.

Authors:  Jorge Frias-Lopez; George T Bonheyo; Qusheng Jin; Bruce W Fouke
Journal:  Appl Environ Microbiol       Date:  2003-04       Impact factor: 4.792

3.  A comparison of DNA profiling techniques for monitoring nutrient impact on microbial community composition during bioremediation of petroleum-contaminated soils.

Authors:  DeEtta K Mills; Kristin Fitzgerald; Carol D Litchfield; Patrick M Gillevet
Journal:  J Microbiol Methods       Date:  2003-07       Impact factor: 2.363

4.  Characterization of the bacterial consortium associated with black band disease in coral using molecular microbiological techniques.

Authors:  Rory P Cooney; Olga Pantos; Martin D A Le Tissier; Michael R Barer; Anthony G O'Donnell; John C Bythell
Journal:  Environ Microbiol       Date:  2002-07       Impact factor: 5.491

5.  Bacterial community associated with black band disease in corals.

Authors:  Jorge Frias-Lopez; James S Klaus; George T Bonheyo; Bruce W Fouke
Journal:  Appl Environ Microbiol       Date:  2004-10       Impact factor: 4.792

6.  Growth and mechanism of filamentous-sulfur formation by Candidatus Arcobacter sulfidicus in opposing oxygen-sulfide gradients.

Authors:  Stefan M Sievert; Elze B A Wieringa; Carl O Wirsen; Craig D Taylor
Journal:  Environ Microbiol       Date:  2007-01       Impact factor: 5.491

7.  Microbial communities in the surface mucopolysaccharide layer and the black band microbial mat of black band-diseased Siderastrea siderea.

Authors:  Raju Sekar; Deetta K Mills; Elizabeth R Remily; Joshua D Voss; Laurie L Richardson
Journal:  Appl Environ Microbiol       Date:  2006-09       Impact factor: 4.792

8.  A single cyanobacterial ribotype is associated with both red and black bands on diseased corals from Palau.

Authors:  Meir Sussman; David G Bourne; Bette L Willis
Journal:  Dis Aquat Organ       Date:  2006-03-23       Impact factor: 1.802

9.  Characterization of an autotrophic sulfide-oxidizing marine Arcobacter sp. that produces filamentous sulfur.

Authors:  C O Wirsen; S M Sievert; C M Cavanaugh; S J Molyneaux; A Ahmad; L T Taylor; E F DeLong; C D Taylor
Journal:  Appl Environ Microbiol       Date:  2002-01       Impact factor: 4.792

10.  Phylogenetic relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments.

Authors:  G Muyzer; A Teske; C O Wirsen; H W Jannasch
Journal:  Arch Microbiol       Date:  1995-09       Impact factor: 2.552
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  6 in total

1.  Habitat-specific environmental conditions primarily control the microbiomes of the coral Seriatopora hystrix.

Authors:  Olga Pantos; Pim Bongaerts; Paul G Dennis; Gene W Tyson; Ove Hoegh-Guldberg
Journal:  ISME J       Date:  2015-02-10       Impact factor: 10.302

2.  Coral transcriptome and bacterial community profiles reveal distinct Yellow Band Disease states in Orbicella faveolata.

Authors:  Collin J Closek; Shinichi Sunagawa; Michael K DeSalvo; Yvette M Piceno; Todd Z DeSantis; Eoin L Brodie; Michele X Weber; Christian R Voolstra; Gary L Andersen; Mónica Medina
Journal:  ISME J       Date:  2014-06-20       Impact factor: 10.302

3.  Bacterial consortium of Millepora dichotoma exhibiting unusual multifocal lesion event in the Gulf of Eilat, Red Sea.

Authors:  Nithyanand Paramasivam; Eitan Ben-Dov; Luba Arotsker; Esti Kramarsky-Winter; Assaf Zvuloni; Yossi Loya; Ariel Kushmaro
Journal:  Microb Ecol       Date:  2012-08-05       Impact factor: 4.552

4.  Substitution by inosine at the 3'-ultimate and penultimate positions of 16S rRNA gene universal primers.

Authors:  Eitan Ben-Dov; Nachshon Siboni; Orr H Shapiro; Luba Arotsker; Ariel Kushmaro
Journal:  Microb Ecol       Date:  2010-07-08       Impact factor: 4.552

5.  The possible role of cyanobacterial filaments in coral black band disease pathology.

Authors:  Esti Kramarsky-Winter; Luba Arotsker; Diana Rasoulouniriana; Nachshon Siboni; Yossi Loya; Ariel Kushmaro
Journal:  Microb Ecol       Date:  2013-10-20       Impact factor: 4.552

6.  Differential effects of frozen storage on the molecular detection of bacterial taxa that inhabit the nasopharynx.

Authors:  Brenda A Kwambana; Nuredin I Mohammed; David Jeffries; Mike Barer; Richard A Adegbola; Martin Antonio
Journal:  BMC Clin Pathol       Date:  2011-01-24
  6 in total

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