Literature DB >> 19241367

Knitting and untying the protein network: modulation of protein ensembles as a therapeutic strategy.

Susana Gordo1, Ernest Giralt.   

Abstract

Proteins constitute the working machinery and structural support of all organisms. In performing a given function, they must adopt highly specific structures that can change with their level of activity, often through the direct or indirect action of other proteins. Indeed, proteins typically function within an ensemble, rather than individually. Hence, they must be sufficiently flexible to interact with each other and execute diverse tasks. The discovery that errors within these groups can ultimately cause disease has led to a paradigm shift in drug discovery, from an emphasis on single protein targets to a holistic approach whereby entire ensembles are targeted.

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Year:  2009        PMID: 19241367      PMCID: PMC2760355          DOI: 10.1002/pro.43

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  117 in total

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Review 2.  Chemical chaperones: a pharmacological strategy for disorders of protein folding and trafficking.

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Review 4.  From words to literature in structural proteomics.

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Journal:  Nature       Date:  2003-03-13       Impact factor: 49.962

5.  Structural characterisation and functional significance of transient protein-protein interactions.

Authors:  Irene M A Nooren; Janet M Thornton
Journal:  J Mol Biol       Date:  2003-01-31       Impact factor: 5.469

Review 6.  Systems biology in drug discovery.

Authors:  Eugene C Butcher; Ellen L Berg; Eric J Kunkel
Journal:  Nat Biotechnol       Date:  2004-10       Impact factor: 54.908

Review 7.  Flexible nets. The roles of intrinsic disorder in protein interaction networks.

Authors:  A Keith Dunker; Marc S Cortese; Pedro Romero; Lilia M Iakoucheva; Vladimir N Uversky
Journal:  FEBS J       Date:  2005-10       Impact factor: 5.542

Review 8.  Targeting protein-protein interactions with small molecules: challenges and perspectives for computational binding epitope detection and ligand finding.

Authors:  Domingo González-Ruiz; Holger Gohlke
Journal:  Curr Med Chem       Date:  2006       Impact factor: 4.530

Review 9.  Principles of protein-protein interactions: what are the preferred ways for proteins to interact?

Authors:  Ozlem Keskin; Attila Gursoy; Buyong Ma; Ruth Nussinov
Journal:  Chem Rev       Date:  2008-03-21       Impact factor: 60.622

Review 10.  Scaffolds for blocking protein-protein interactions.

Authors:  Stefan J Hershberger; Song-Gil Lee; Jean Chmielewski
Journal:  Curr Top Med Chem       Date:  2007       Impact factor: 3.295

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  9 in total

Review 1.  Natural products as chemical probes.

Authors:  Erin E Carlson
Journal:  ACS Chem Biol       Date:  2010-07-16       Impact factor: 5.100

Review 2.  Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review.

Authors:  Peter Csermely; Tamás Korcsmáros; Huba J M Kiss; Gábor London; Ruth Nussinov
Journal:  Pharmacol Ther       Date:  2013-02-04       Impact factor: 12.310

3.  Binding of a small molecule at a protein-protein interface regulates the chaperone activity of hsp70-hsp40.

Authors:  Susanne Wisén; Eric B Bertelsen; Andrea D Thompson; Srikanth Patury; Peter Ung; Lyra Chang; Christopher G Evans; Gladis M Walter; Peter Wipf; Heather A Carlson; Jeffrey L Brodsky; Erik R P Zuiderweg; Jason E Gestwicki
Journal:  ACS Chem Biol       Date:  2010-06-18       Impact factor: 5.100

4.  NMR analysis of G-protein betagamma subunit complexes reveals a dynamic G(alpha)-Gbetagamma subunit interface and multiple protein recognition modes.

Authors:  Alan V Smrcka; Nessim Kichik; Teresa Tarragó; Michael Burroughs; Min-Sun Park; Nathan K Itoga; Harry A Stern; Barry M Willardson; Ernest Giralt
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-16       Impact factor: 11.205

Review 5.  Features of protein-protein interactions that translate into potent inhibitors: topology, surface area and affinity.

Authors:  Matthew C Smith; Jason E Gestwicki
Journal:  Expert Rev Mol Med       Date:  2012-07-26       Impact factor: 5.600

6.  Inhibitors of difficult protein-protein interactions identified by high-throughput screening of multiprotein complexes.

Authors:  Laura C Cesa; Srikanth Patury; Tomoko Komiyama; Atta Ahmad; Erik R P Zuiderweg; Jason E Gestwicki
Journal:  ACS Chem Biol       Date:  2013-07-09       Impact factor: 5.100

7.  DARC 2.0: Improved Docking and Virtual Screening at Protein Interaction Sites.

Authors:  Ragul Gowthaman; Sergey Lyskov; John Karanicolas
Journal:  PLoS One       Date:  2015-07-16       Impact factor: 3.240

Review 8.  Direct and Propagated Effects of Small Molecules on Protein-Protein Interaction Networks.

Authors:  Laura C Cesa; Anna K Mapp; Jason E Gestwicki
Journal:  Front Bioeng Biotechnol       Date:  2015-08-24

Review 9.  Computational Modeling as a Tool to Investigate PPI: From Drug Design to Tissue Engineering.

Authors:  Juan J Perez; Roman A Perez; Alberto Perez
Journal:  Front Mol Biosci       Date:  2021-05-20
  9 in total

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