Literature DB >> 19233234

Database-managed grid-enabled analysis of neuroimaging data: the CNARI framework.

Steven L Small1, Michael Wilde, Sarah Kenny, Michael Andric, Uri Hasson.   

Abstract

Functional magnetic resonance imaging (fMRI) has led to an enormous growth in the study of cognitive neuroanatomy, and combined with advances in high-field electrophysiology (and other methods), has led to a fast-growing field of human neuroscience. Technological advances in both hardware and software will lead to an ever more promising future for fMRI. We have developed a new computational framework that facilitates fMRI experimentation and analysis, and which has led to some rethinking of the nature of experimental design and analysis. The Computational Neuroscience Applications Research Infrastructure (CNARI) incorporates novel methods for maintaining, serving, and analyzing massive amounts of fMRI data. By using CNARI, it is possible to perform naturalistic, network-based, statistically valid experiments in systems neuroscience on a very large scale, with ease of data manipulation and analysis, within reasonable computational time scales. In this article, we describe this infrastructure and then illustrate its use on a number of actual examples in both cognitive neuroscience and neurological research. We believe that these advanced computational approaches will fundamentally change the future shape of cognitive brain imaging with fMRI.

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Year:  2009        PMID: 19233234      PMCID: PMC2703469          DOI: 10.1016/j.ijpsycho.2009.01.010

Source DB:  PubMed          Journal:  Int J Psychophysiol        ISSN: 0167-8760            Impact factor:   2.997


  45 in total

1.  Neural modeling, functional brain imaging, and cognition.

Authors: 
Journal:  Trends Cogn Sci       Date:  1999-03       Impact factor: 20.229

2.  The grid: computing without bounds.

Authors:  Ian Foster
Journal:  Sci Am       Date:  2003-04       Impact factor: 2.142

3.  A grid-based image archival and analysis system.

Authors:  Shannon Hastings; Scott Oster; Stephen Langella; Tahsin M Kurc; Tony Pan; Umit V Catalyurek; Joel H Saltz
Journal:  J Am Med Inform Assoc       Date:  2005-01-31       Impact factor: 4.497

Review 4.  Advances in functional and structural MR image analysis and implementation as FSL.

Authors:  Stephen M Smith; Mark Jenkinson; Mark W Woolrich; Christian F Beckmann; Timothy E J Behrens; Heidi Johansen-Berg; Peter R Bannister; Marilena De Luca; Ivana Drobnjak; David E Flitney; Rami K Niazy; James Saunders; John Vickers; Yongyue Zhang; Nicola De Stefano; J Michael Brady; Paul M Matthews
Journal:  Neuroimage       Date:  2004       Impact factor: 6.556

5.  The Extensible Neuroimaging Archive Toolkit: an informatics platform for managing, exploring, and sharing neuroimaging data.

Authors:  Daniel S Marcus; Timothy R Olsen; Mohana Ramaratnam; Randy L Buckner
Journal:  Neuroinformatics       Date:  2007

6.  Large-scale neural model validation of partial correlation analysis for effective connectivity investigation in functional MRI.

Authors:  G Marrelec; J Kim; J Doyon; B Horwitz
Journal:  Hum Brain Mapp       Date:  2009-03       Impact factor: 5.038

Review 7.  Distributed hierarchical processing in the primate cerebral cortex.

Authors:  D J Felleman; D C Van Essen
Journal:  Cereb Cortex       Date:  1991 Jan-Feb       Impact factor: 5.357

8.  Task-dependent organization of brain regions active during rest.

Authors:  Uri Hasson; Howard C Nusbaum; Steven L Small
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-17       Impact factor: 11.205

9.  Parietal, temporal, and occipital projections to cortex of the superior temporal sulcus in the rhesus monkey: a retrograde tracer study.

Authors:  B Seltzer; D N Pandya
Journal:  J Comp Neurol       Date:  1994-05-15       Impact factor: 3.215

10.  Speech-associated gestures, Broca's area, and the human mirror system.

Authors:  Jeremy I Skipper; Susan Goldin-Meadow; Howard C Nusbaum; Steven L Small
Journal:  Brain Lang       Date:  2007-06       Impact factor: 2.381

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  1 in total

1.  Parallel workflows for data-driven structural equation modeling in functional neuroimaging.

Authors:  Sarah Kenny; Michael Andric; Steven M Boker; Michael C Neale; Michael Wilde; Steven L Small
Journal:  Front Neuroinform       Date:  2009-10-20       Impact factor: 4.081

  1 in total

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