Literature DB >> 19228559

Causes of transient instabilities in the dynamic clamp.

Amanda J Preyer1, Robert J Butera.   

Abstract

The dynamic clamp is a widely used method for integrating mathematical models with electrophysiological experiments. This method involves measuring the membrane voltage of a cell, using it to solve computational models of ion channel dynamics in real-time, and injecting the calculated current(s) back into the cell. Limitations of this technique include those associated with single electrode current clamping and the sampling effects caused by the dynamic clamp. In this study, we show that the combination of these limitations causes transient instabilities under certain conditions. Through physical experiments and simulations, we show that dynamic clamp instability is directly related to the sampling delay and the maximum simulated conductance being injected. It is exaggerated by insufficient electrode series resistance and capacitance compensation. Increasing the sampling rate of the dynamic clamp system increases dynamic clamp stability; however, this improvement, is constrained by how well the electrode series resistance and capacitance are compensated. At present, dynamic clamp sampling rates are justified solely on the temporal dynamics of the models being simulated; here we show that faster rates increase the stable range of operation for the dynamic clamp system. In addition, we show that commonly accepted levels of resistance compensation nevertheless significantly compromise the stability of a dynamic clamp system.

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Year:  2009        PMID: 19228559      PMCID: PMC2748832          DOI: 10.1109/TNSRE.2009.2015205

Source DB:  PubMed          Journal:  IEEE Trans Neural Syst Rehabil Eng        ISSN: 1534-4320            Impact factor:   3.802


  42 in total

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2.  Software-based correction of single compartment series resistance errors.

Authors:  S F Traynelis
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3.  Experimental model for an ectopic focus coupled to ventricular cells.

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4.  Action potential conduction between a ventricular cell model and an isolated ventricular cell.

Authors:  R Wilders; R Kumar; R W Joyner; H J Jongsma; E E Verheijck; D Golod; A C van Ginneken; W N Goolsby
Journal:  Biophys J       Date:  1996-01       Impact factor: 4.033

5.  Modalities of distortion of physiological voltage signals by patch-clamp amplifiers: a modeling study.

Authors:  J Magistretti; M Mantegazza; M de Curtis; E Wanke
Journal:  Biophys J       Date:  1998-02       Impact factor: 4.033

Review 6.  From conductances to neural network properties: analysis of simple circuits using the hybrid network method.

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7.  Model clamp and its application to synchronization of rabbit sinoatrial node cells.

Authors:  R Wilders; E E Verheijck; R Kumar; W N Goolsby; A C van Ginneken; R W Joyner; H J Jongsma
Journal:  Am J Physiol       Date:  1996-11

8.  Pacemaker synchronization of electrically coupled rabbit sinoatrial node cells.

Authors:  E E Verheijck; R Wilders; R W Joyner; D A Golod; R Kumar; H J Jongsma; L N Bouman; A C van Ginneken
Journal:  J Gen Physiol       Date:  1998-01       Impact factor: 4.086

9.  Gamma-aminobutyric acid type B receptor-dependent burst-firing in thalamic neurons: a dynamic clamp study.

Authors:  D Ulrich; J R Huguenard
Journal:  Proc Natl Acad Sci U S A       Date:  1996-11-12       Impact factor: 11.205

10.  Modulation of the bursting properties of single mouse pancreatic beta-cells by artificial conductances.

Authors:  T A Kinard; G de Vries; A Sherman; L S Satin
Journal:  Biophys J       Date:  1999-03       Impact factor: 4.033

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  5 in total

Review 1.  The past, present, and future of real-time control in cellular electrophysiology.

Authors:  Jennifer A Bauer; Katherine M Lambert; John A White
Journal:  IEEE Trans Biomed Eng       Date:  2014-04-01       Impact factor: 4.538

2.  Dynamic clamp: alteration of response properties and creation of virtual realities in neurophysiology.

Authors:  Michael N Economo; Fernando R Fernandez; John A White
Journal:  J Neurosci       Date:  2010-02-17       Impact factor: 6.167

3.  Dynamic clamp with StdpC software.

Authors:  Ildikó Kemenes; Vincenzo Marra; Michael Crossley; Dávid Samu; Kevin Staras; György Kemenes; Thomas Nowotny
Journal:  Nat Protoc       Date:  2011-03-03       Impact factor: 13.491

4.  Single electrode dynamic clamp with StdpC.

Authors:  David Samu; Vincenzo Marra; Ildiko Kemenes; Michael Crossley; György Kemenes; Kevin Staras; Thomas Nowotny
Journal:  J Neurosci Methods       Date:  2012-08-14       Impact factor: 2.390

5.  Hard real-time closed-loop electrophysiology with the Real-Time eXperiment Interface (RTXI).

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Journal:  PLoS Comput Biol       Date:  2017-05-30       Impact factor: 4.475

  5 in total

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