Literature DB >> 19222296

Chain dimensions and fluctuations in elastomeric networks in which the junctions alternate regularly in their functionality.

Aris Skliros1, James E Mark, Andrzej Kloczkowski.   

Abstract

A matrix method is used to determine fluctuations of junctions and points along the polymer chains making up a phantom Gaussian network that has the topology of an infinite, symmetrically grown tree. The functionalities of the junctions alternates between phi(1) and phi(2), such that one end of each network chain has functionality phi(1), while the opposite end has functionality phi(2). Quantities calculated include fluctuations of phi(1)-functional and phi(2)-functional junctions, and fluctuations of points along network chains, as well as correlations of these fluctuations. This was done for points and junctions along any path in the network, where these points and junctions were separated by no junctions or several junctions, Fluctuations have also been calculated for the distances between points and junctions. The present results represent significant generalizations of earlier work in this area [Kloczkowski et al., Macromolecules 22, 1423 (1989)]. These generalizations and extensions should be very useful in a number of contexts, such as interpreting small-angle neutron scattering results on labeled paths in polymer networks, or fluctuations of loops in the Gaussian network model of proteins.

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Year:  2009        PMID: 19222296      PMCID: PMC2736624          DOI: 10.1063/1.3063115

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  3 in total

1.  Large Amplitude Elastic Motions in Proteins from a Single-Parameter, Atomic Analysis.

Authors: 
Journal:  Phys Rev Lett       Date:  1996-08-26       Impact factor: 9.161

2.  The Extent of Cooperativity of Protein Motions Observed with Elastic Network Models Is Similar for Atomic and Coarser-Grained Models.

Authors:  Taner Z Sen; Yaping Feng; John V Garcia; Andrzej Kloczkowski; Robert L Jernigan
Journal:  J Chem Theory Comput       Date:  2006       Impact factor: 6.006

3.  Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential.

Authors:  I Bahar; A R Atilgan; B Erman
Journal:  Fold Des       Date:  1997
  3 in total
  2 in total

1.  Models to Approximate the Motions of Protein Loops.

Authors:  Aris Skliros; Robert L Jernigan; Andrzej Kloczkowski
Journal:  J Chem Theory Comput       Date:  2010-10-12       Impact factor: 6.006

2.  The importance of slow motions for protein functional loops.

Authors:  Aris Skliros; Michael T Zimmermann; Debkanta Chakraborty; Saras Saraswathi; Ataur R Katebi; Sumudu P Leelananda; Andrzej Kloczkowski; Robert L Jernigan
Journal:  Phys Biol       Date:  2012-02-07       Impact factor: 2.583

  2 in total

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