Literature DB >> 19221801

Identification and characterisation of human dysferlin transcript variants: implications for dysferlin mutational screening and isoforms.

Zacharias Aloysius Dwi Pramono1, Chin Lai Tan, Irene Ai Lian Seah, Joseph Shean Long See, Siok Yuen Kam, Poh San Lai, Woon Chee Yee.   

Abstract

In conducting dysferlin mutational screening using blood mRNA instead of genomic DNA, we identified the occurrence of alternative splicing involving novel dysferlin exons, i.e. exons 5a and 40a, in addition to previously reported alternative splicing of exon 17. Further study employing long range RT-PCR and subcloning revealed a total of fourteen dysferlin transcripts with maintained dysferlin reading frame. The study also characterised the differences in relative frequencies of the dysferlin transcripts in skeletal muscle and blood. The findings have potential implications for molecular diagnosis of dysferlinopathy and the identification of dysferlin isoforms.

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Year:  2009        PMID: 19221801     DOI: 10.1007/s00439-009-0632-y

Source DB:  PubMed          Journal:  Hum Genet        ISSN: 0340-6717            Impact factor:   4.132


  19 in total

1.  Identification and characterization of a novel human dysferlin transcript: dysferlin_v1.

Authors:  Zacharias Aloysius Dwi Pramono; Poh San Lai; Chin Lai Tan; Shin'ichi Takeda; Woon Chee Yee
Journal:  Hum Genet       Date:  2006-08-02       Impact factor: 4.132

2.  Identical mutation in patients with limb girdle muscular dystrophy type 2B or Miyoshi myopathy suggests a role for modifier gene(s).

Authors:  T Weiler; R Bashir; L V Anderson; K Davison; J A Moss; S Britton; E Nylen; S Keers; E Vafiadaki; C R Greenberg; C R Bushby; K Wrogemann
Journal:  Hum Mol Genet       Date:  1999-05       Impact factor: 6.150

3.  A novel, blood-based diagnostic assay for limb girdle muscular dystrophy 2B and Miyoshi myopathy.

Authors:  Mengfatt Ho; Eduard Gallardo; Diane McKenna-Yasek; Noemi De Luna; Isabel Illa; Robert H Brown
Journal:  Ann Neurol       Date:  2002-01       Impact factor: 10.422

Review 4.  Control selection for RNA quantitation.

Authors:  T Suzuki; P J Higgins; D R Crawford
Journal:  Biotechniques       Date:  2000-08       Impact factor: 1.993

5.  Dysferlin expression in monocytes: a source of mRNA for mutation analysis.

Authors:  N De Luna; A Freixas; P Gallano; L Caselles; R Rojas-García; C Paradas; G Nogales; R Dominguez-Perles; L Gonzalez-Quereda; J J Vílchez; C Márquez; J Bautista; A Guerrero; J A Salazar; A Pou; I Illa; E Gallardo
Journal:  Neuromuscul Disord       Date:  2006-10-27       Impact factor: 4.296

6.  Splice site prediction in Arabidopsis thaliana pre-mRNA by combining local and global sequence information.

Authors:  S M Hebsgaard; P G Korning; N Tolstrup; J Engelbrecht; P Rouzé; S Brunak
Journal:  Nucleic Acids Res       Date:  1996-09-01       Impact factor: 16.971

7.  Mutations in Czech LGMD2A patients revealed by analysis of calpain3 mRNA and their phenotypic outcome.

Authors:  Tána Chrobáková; Markéta Hermanová; Iva Kroupová; Petr Vondrácek; Tat'ána Maríková; Radim Mazanec; Josef Zámecník; Jan Stanek; Miluse Havlová; Lenka Fajkusová
Journal:  Neuromuscul Disord       Date:  2004-10       Impact factor: 4.296

Review 8.  Dysferlin and the plasma membrane repair in muscular dystrophy.

Authors:  Dimple Bansal; Kevin P Campbell
Journal:  Trends Cell Biol       Date:  2004-04       Impact factor: 20.808

9.  A gene related to Caenorhabditis elegans spermatogenesis factor fer-1 is mutated in limb-girdle muscular dystrophy type 2B.

Authors:  R Bashir; S Britton; T Strachan; S Keers; E Vafiadaki; M Lako; I Richard; S Marchand; N Bourg; Z Argov; M Sadeh; I Mahjneh; G Marconi; M R Passos-Bueno; E de S Moreira; M Zatz; J S Beckmann; K Bushby
Journal:  Nat Genet       Date:  1998-09       Impact factor: 38.330

10.  Dysferlin, a novel skeletal muscle gene, is mutated in Miyoshi myopathy and limb girdle muscular dystrophy.

Authors:  J Liu; M Aoki; I Illa; C Wu; M Fardeau; C Angelini; C Serrano; J A Urtizberea; F Hentati; M B Hamida; S Bohlega; E J Culper; A A Amato; K Bossie; J Oeltjen; K Bejaoui; D McKenna-Yasek; B A Hosler; E Schurr; K Arahata; P J de Jong; R H Brown
Journal:  Nat Genet       Date:  1998-09       Impact factor: 38.330

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  11 in total

Review 1.  Membrane Repair: Mechanisms and Pathophysiology.

Authors:  Sandra T Cooper; Paul L McNeil
Journal:  Physiol Rev       Date:  2015-10       Impact factor: 37.312

Review 2.  Translational research and therapeutic perspectives in dysferlinopathies.

Authors:  Florian Barthélémy; Nicolas Wein; Martin Krahn; Nicolas Lévy; Marc Bartoli
Journal:  Mol Med       Date:  2011-05-06       Impact factor: 6.354

3.  Limited proteolysis as a tool to probe the tertiary conformation of dysferlin and structural consequences of patient missense variant L344P.

Authors:  Natalie Woolger; Adam Bournazos; Reece A Sophocleous; Frances J Evesson; Angela Lek; Birgit Driemer; R Bryan Sutton; Sandra T Cooper
Journal:  J Biol Chem       Date:  2017-09-13       Impact factor: 5.157

4.  Alternate splicing of dysferlin C2A confers Ca²⁺-dependent and Ca²⁺-independent binding for membrane repair.

Authors:  Kerry Fuson; Anne Rice; Ryan Mahling; Adam Snow; Kamakshi Nayak; Prajna Shanbhogue; Austin G Meyer; Gregory M I Redpath; Anne Hinderliter; Sandra T Cooper; R Bryan Sutton
Journal:  Structure       Date:  2013-11-14       Impact factor: 5.006

5.  Muscular dystrophy with marked Dysferlin deficiency is consistently caused by primary dysferlin gene mutations.

Authors:  Mafalda Cacciottolo; Gelsomina Numitone; Stefania Aurino; Imma Rosaria Caserta; Marina Fanin; Luisa Politano; Carlo Minetti; Enzo Ricci; Giulio Piluso; Corrado Angelini; Vincenzo Nigro
Journal:  Eur J Hum Genet       Date:  2011-04-27       Impact factor: 4.246

6.  Calpain cleavage within dysferlin exon 40a releases a synaptotagmin-like module for membrane repair.

Authors:  G M I Redpath; N Woolger; A K Piper; F A Lemckert; A Lek; P A Greer; K N North; S T Cooper
Journal:  Mol Biol Cell       Date:  2014-08-20       Impact factor: 4.138

7.  Correction of pseudoexon splicing caused by a novel intronic dysferlin mutation.

Authors:  Janice A Dominov; Özgün Uyan; Diane McKenna-Yasek; Babi Ramesh Reddy Nallamilli; Virginie Kergourlay; Marc Bartoli; Nicolas Levy; Judith Hudson; Teresinha Evangelista; Hanns Lochmuller; Martin Krahn; Laura Rufibach; Madhuri Hegde; Robert H Brown
Journal:  Ann Clin Transl Neurol       Date:  2019-03-03       Impact factor: 4.511

8.  A novel dysferlin mutant pseudoexon bypassed with antisense oligonucleotides.

Authors:  Janice A Dominov; Ozgün Uyan; Peter C Sapp; Diane McKenna-Yasek; Babi R R Nallamilli; Madhuri Hegde; Robert H Brown
Journal:  Ann Clin Transl Neurol       Date:  2014-09-27       Impact factor: 4.511

9.  Association of Limb-Girdle muscular dystrophy with multiple sclerosis: A case report.

Authors:  Mahsa Arzani; Hamed Rezaei; Abdorreza Naser Moghadasi
Journal:  Caspian J Intern Med       Date:  2018

10.  Detection of Dysferlin Gene Pathogenic Variants in the Indian Population in Patients Predicted to have a Dysferlinopathy Using a Blood-based Monocyte Assay and Clinical Algorithm: A Model for Accurate and Cost-effective Diagnosis.

Authors:  Rashna Sam Dastur; Pradnya Satish Gaitonde; Munira Kachwala; Babi R R Nallamilli; Arunkanth Ankala; Satish V Khadilkar; Nalini Atchayaram; N Gayathri; A K Meena; Laura Rufibach; Sarah Shira; Madhuri Hegde
Journal:  Ann Indian Acad Neurol       Date:  2017 Jul-Sep       Impact factor: 1.383

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