Literature DB >> 19220865

Dynamic 13C-tracer study of storage carbohydrate pools in aerobic glucose-limited Saccharomyces cerevisiae confirms a rapid steady-state turnover and fast mobilization during a modest stepup in the glucose uptake rate.

Fredrick O Aboka1, Joseph J Heijnen, Wouter A van Winden.   

Abstract

In this research, two dynamic (13)C-labeling experiments confirmed turnover and rapid mobilization of stored glycogen and trehalose in an aerobic glucose-limited chemostat (D=0.05 h(-1)) culture of Saccharomyces cerevisiae. In one experiment, the continuous feed to an aerobic glucose-limited chemostat culture of S. cerevisiae was instantaneously switched from naturally labeled to fully (13)C labeled while maintaining the same feed rate before and after the switch. The dynamic replacements of naturally labeled intracellular glycolytic intermediates and CO(2) (in the off-gas) with their (13)C-labeled equivalents were measured. The data of this experiment suggest that the continuous turnover of glycogen and trehalose is substantial (c. 1/3 of the glycolytic flux). The second experiment combined the medium switch with a shiftup in the glucose feeding rate (dilution rate shiftup from 0.05 to 0.10 h(-1)). This experiment triggered a strong but transient mobilization of storage carbon, that was channelled into glycolysis, causing a significant disruption in the dynamic labeling profile of glycolytic intermediates. The off-gas measurements in the shiftup experiment confirmed a considerable transient influx of (12)C-carbon into glycolysis after the combined medium switch and dilution rate shiftup. This study shows that for accurate in vivo kinetic interpretation of rapid pulse experiments, glycogen and trehalose metabolism must be taken into account.

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Year:  2009        PMID: 19220865     DOI: 10.1111/j.1567-1364.2008.00465.x

Source DB:  PubMed          Journal:  FEMS Yeast Res        ISSN: 1567-1356            Impact factor:   2.796


  10 in total

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2.  Carbon flux analysis by 13C nuclear magnetic resonance to determine the effect of CO2 on anaerobic succinate production by Corynebacterium glutamicum.

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Review 4.  Achieving Metabolic Flux Analysis for S. cerevisiae at a Genome-Scale: Challenges, Requirements, and Considerations.

Authors:  Saratram Gopalakrishnan; Costas D Maranas
Journal:  Metabolites       Date:  2015-09-18

5.  Quantitative Metabolomics and Instationary 13C-Metabolic Flux Analysis Reveals Impact of Recombinant Protein Production on Trehalose and Energy Metabolism in Pichia pastoris.

Authors:  Joel Jordà; Hugo Cueto Rojas; Marc Carnicer; Aljoscha Wahl; Pau Ferrer; Joan Albiol
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6.  Fast "Feast/Famine" Cycles for Studying Microbial Physiology Under Dynamic Conditions: A Case Study with Saccharomyces cerevisiae.

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7.  Interaction of storage carbohydrates and other cyclic fluxes with central metabolism: A quantitative approach by non-stationary 13C metabolic flux analysis.

Authors:  C A Suarez-Mendez; M Hanemaaijer; Angela Ten Pierick; J C Wolters; J J Heijnen; S A Wahl
Journal:  Metab Eng Commun       Date:  2016-01-22

8.  Metabolic adjustment upon repetitive substrate perturbations using dynamic 13C-tracing in yeast.

Authors:  C A Suarez-Mendez; C Ras; S A Wahl
Journal:  Microb Cell Fact       Date:  2017-09-25       Impact factor: 5.328

9.  Glucose-methanol co-utilization in Pichia pastoris studied by metabolomics and instationary ¹³C flux analysis.

Authors:  Joel Jordà; Camilo Suarez; Marc Carnicer; Angela ten Pierick; Joseph J Heijnen; Walter van Gulik; Pau Ferrer; Joan Albiol; Aljoscha Wahl
Journal:  BMC Syst Biol       Date:  2013-02-28

10.  Substrate cycles in Penicillium chrysogenum quantified by isotopic non-stationary flux analysis.

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  10 in total

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