Literature DB >> 19217850

A biophysically based mathematical model for the kinetics of mitochondrial calcium uniporter.

Ranjan K Dash1, Feng Qi, Daniel A Beard.   

Abstract

Ca2+ transport through mitochondrial Ca2+ uniporter is the primary Ca2+ uptake mechanism in respiring mitochondria. Thus, the uniporter plays a key role in regulating mitochondrial Ca2+. Despite the importance of mitochondrial Ca2+ to metabolic regulation and mitochondrial function, and to cell physiology and pathophysiology, the structure and composition of the uniporter functional unit and kinetic mechanisms associated with Ca2+ transport into mitochondria are still not well understood. In this study, based on available experimental data on the kinetics of Ca2+ transport via the uniporter, a mechanistic kinetic model of the uniporter is introduced. The model is thermodynamically balanced and satisfactorily describes a large number of independent data sets in the literature on initial or pseudo-steady-state influx rates of Ca2+ via the uniporter measured under a wide range of experimental conditions. The model is derived assuming a multi-state catalytic binding and Eyring's free-energy barrier theory-based transformation mechanisms associated with the carrier-mediated facilitated transport and electrodiffusion. The model is a great improvement over the previous theoretical models of mitochondrial Ca2+ uniporter in the literature in that it is thermodynamically balanced and matches a large number of independently published data sets on mitochondrial Ca2+ uptake. This theoretical model will be critical in developing mechanistic, integrated models of mitochondrial Ca2+ handling and bioenergetics which can be helpful in understanding the mechanisms by which Ca2+ plays a role in mediating signaling pathways and modulating mitochondrial energy metabolism.

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 19217850      PMCID: PMC2717240          DOI: 10.1016/j.bpj.2008.11.005

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  29 in total

Review 1.  Theoretical analysis of ion conductance in lipid bilayer membranes.

Authors:  P Läuger; B Neumcke
Journal:  Membranes       Date:  1973

2.  Ion transport through pores: a rate-theory analysis.

Authors:  P Läuger
Journal:  Biochim Biophys Acta       Date:  1973-07-06

3.  The initial velocities of calcium uptake by rat liver mitochondria.

Authors:  A Vinogradov; A Scarpa
Journal:  J Biol Chem       Date:  1973-08-10       Impact factor: 5.157

4.  Model study of ATP and ADP buffering, transport of Ca(2+) and Mg(2+), and regulation of ion pumps in ventricular myocyte.

Authors:  A Michailova; A McCulloch
Journal:  Biophys J       Date:  2001-08       Impact factor: 4.033

5.  An integrated model of cardiac mitochondrial energy metabolism and calcium dynamics.

Authors:  Sonia Cortassa; Miguel A Aon; Eduardo Marbán; Raimond L Winslow; Brian O'Rourke
Journal:  Biophys J       Date:  2003-04       Impact factor: 4.033

Review 6.  Mitochondria and calcium: from cell signalling to cell death.

Authors:  M R Duchen
Journal:  J Physiol       Date:  2000-11-15       Impact factor: 5.182

Review 7.  Calcium, ATP, and ROS: a mitochondrial love-hate triangle.

Authors:  Paul S Brookes; Yisang Yoon; James L Robotham; M W Anders; Shey-Shing Sheu
Journal:  Am J Physiol Cell Physiol       Date:  2004-10       Impact factor: 4.249

8.  The mitochondrial calcium uniporter is a highly selective ion channel.

Authors:  Yuriy Kirichok; Grigory Krapivinsky; David E Clapham
Journal:  Nature       Date:  2004-01-22       Impact factor: 49.962

9.  Analysis of cardiac mitochondrial Na+-Ca2+ exchanger kinetics with a biophysical model of mitochondrial Ca2+ handling suggests a 3:1 stoichiometry.

Authors:  Ranjan K Dash; Daniel A Beard
Journal:  J Physiol       Date:  2008-05-08       Impact factor: 5.182

10.  Mechanisms for intracellular calcium regulation in heart. I. Stopped-flow measurements of Ca++ uptake by cardiac mitochondria.

Authors:  A Scarpa; P Graziotti
Journal:  J Gen Physiol       Date:  1973-12       Impact factor: 4.086

View more
  23 in total

1.  A biophysically based mathematical model for the kinetics of mitochondrial Na+-Ca2+ antiporter.

Authors:  Ranjan K Pradhan; Daniel A Beard; Ranjan K Dash
Journal:  Biophys J       Date:  2010-01-20       Impact factor: 4.033

2.  Characterization of Mg2+ inhibition of mitochondrial Ca2+ uptake by a mechanistic model of mitochondrial Ca2+ uniporter.

Authors:  Ranjan K Pradhan; Feng Qi; Daniel A Beard; Ranjan K Dash
Journal:  Biophys J       Date:  2011-11-01       Impact factor: 4.033

Review 3.  Different approaches to modeling analysis of mitochondrial swelling.

Authors:  Sabzali Javadov; Xavier Chapa-Dubocq; Vladimir Makarov
Journal:  Mitochondrion       Date:  2017-08-10       Impact factor: 4.160

Review 4.  Simulation of cellular biochemical system kinetics.

Authors:  Daniel A Beard
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2010-12-17

Review 5.  Cardiac myocytes and local signaling in nano-domains.

Authors:  Raimond L Winslow; Joseph L Greenstein
Journal:  Prog Biophys Mol Biol       Date:  2011-06-21       Impact factor: 3.667

6.  Enhanced charge-independent mitochondrial free Ca(2+) and attenuated ADP-induced NADH oxidation by isoflurane: Implications for cardioprotection.

Authors:  Bhawana Agarwal; Amadou K S Camara; David F Stowe; Zeljko J Bosnjak; Ranjan K Dash
Journal:  Biochim Biophys Acta       Date:  2011-12-02

7.  Dynamic buffering of mitochondrial Ca2+ during Ca2+ uptake and Na+-induced Ca2+ release.

Authors:  Christoph A Blomeyer; Jason N Bazil; David F Stowe; Ranjan K Pradhan; Ranjan K Dash; Amadou K S Camara
Journal:  J Bioenerg Biomembr       Date:  2012-12-07       Impact factor: 2.945

Review 8.  The connection between inner membrane topology and mitochondrial function.

Authors:  Carmen A Mannella; W Jonathan Lederer; M Saleet Jafri
Journal:  J Mol Cell Cardiol       Date:  2013-05-12       Impact factor: 5.000

9.  Computational analysis of Ca2+ dynamics in isolated cardiac mitochondria predicts two distinct modes of Ca2+ uptake.

Authors:  Shivendra G Tewari; Amadou K S Camara; David F Stowe; Ranjan K Dash
Journal:  J Physiol       Date:  2014-03-03       Impact factor: 5.182

Review 10.  Mitochondrial calcium uptake.

Authors:  George S B Williams; Liron Boyman; Aristide C Chikando; Ramzi J Khairallah; W J Lederer
Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-12       Impact factor: 11.205

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.