Literature DB >> 19216440

Jumbo bacteriophages.

R W Hendrix1.   

Abstract

There is currently a handful of genome sequences available for tailed bacteriophages with genomes of more than 200 kbp of DNA, designated here as giant or jumbo phages. The majority of the proteins predicted from the genome sequences of these phages have no matches in the current sequence databases, and the genomes themselves are diverse enough to preclude the sorts of detailed comparative analysis that has benefited study of the smaller phages, for which hundreds of genome sequences are available. However, it is informative to extrapolate the better known genome organizations and mechanisms of evolution seen in the smaller phages to the jumbo phages. In this way, we see that the jumbo phages encode the same functions as the smaller phages, supplemented with large numbers of mostly small genes of mostly undiscovered functions. A case can be made that the jumbo phages evolved from smaller tailed phages, possibly in a process mediated by the constraints imposed on genome size by capsid size.

Mesh:

Year:  2009        PMID: 19216440     DOI: 10.1007/978-3-540-68618-7_7

Source DB:  PubMed          Journal:  Curr Top Microbiol Immunol        ISSN: 0070-217X            Impact factor:   4.291


  43 in total

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Authors:  Welkin H Pope; Kirk R Anders; Madison Baird; Charles A Bowman; Michelle M Boyle; Gregory W Broussard; Tiffany Chow; Kari L Clase; Shannon Cooper; Kathleen A Cornely; Randall J DeJong; Veronique A Delesalle; Lisa Deng; David Dunbar; Nicholas P Edgington; Christina M Ferreira; Kathleen Weston Hafer; Grant A Hartzog; J Robert Hatherill; Lee E Hughes; Khristina Ipapo; Greg P Krukonis; Christopher G Meier; Denise L Monti; Matthew R Olm; Shallee T Page; Craig L Peebles; Claire A Rinehart; Michael R Rubin; Daniel A Russell; Erin R Sanders; Morgan Schoer; Christopher D Shaffer; James Wherley; Edwin Vazquez; Han Yuan; Daiyuan Zhang; Steven G Cresawn; Deborah Jacobs-Sera; Roger W Hendrix; Graham F Hatfull
Journal:  J Virol       Date:  2013-12-11       Impact factor: 5.103

2.  Insights into head-tailed viruses infecting extremely halophilic archaea.

Authors:  Maija K Pietilä; Pasi Laurinmäki; Daniel A Russell; Ching-Chung Ko; Deborah Jacobs-Sera; Sarah J Butcher; Dennis H Bamford; Roger W Hendrix
Journal:  J Virol       Date:  2013-01-02       Impact factor: 5.103

3.  Development of giant bacteriophage ϕKZ is independent of the host transcription apparatus.

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Journal:  J Virol       Date:  2014-06-25       Impact factor: 5.103

Review 4.  Molecular architecture of tailed double-stranded DNA phages.

Authors:  Andrei Fokine; Michael G Rossmann
Journal:  Bacteriophage       Date:  2014-02-21

Review 5.  Roger Hendrix: Gentle Provocateur.

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Review 6.  Genomics of bacterial and archaeal viruses: dynamics within the prokaryotic virosphere.

Authors:  Mart Krupovic; David Prangishvili; Roger W Hendrix; Dennis H Bamford
Journal:  Microbiol Mol Biol Rev       Date:  2011-12       Impact factor: 11.056

Review 7.  DNA viruses: the really big ones (giruses).

Authors:  James L Van Etten; Leslie C Lane; David D Dunigan
Journal:  Annu Rev Microbiol       Date:  2010       Impact factor: 15.500

8.  The wonder world of microbial viruses.

Authors:  Eugene V Koonin
Journal:  Expert Rev Anti Infect Ther       Date:  2010-10       Impact factor: 5.091

9.  Mycobacteriophage Marvin: a new singleton phage with an unusual genome organization.

Authors:  Catherine Mageeney; Welkin H Pope; Melinda Harrison; Deborah Moran; Trevor Cross; Deborah Jacobs-Sera; Roger W Hendrix; David Dunbar; Graham F Hatfull
Journal:  J Virol       Date:  2012-02-22       Impact factor: 5.103

10.  Comparative genomic analysis of 60 Mycobacteriophage genomes: genome clustering, gene acquisition, and gene size.

Authors:  Graham F Hatfull; Deborah Jacobs-Sera; Jeffrey G Lawrence; Welkin H Pope; Daniel A Russell; Ching-Chung Ko; Rebecca J Weber; Manisha C Patel; Katherine L Germane; Robert H Edgar; Natasha N Hoyte; Charles A Bowman; Anthony T Tantoco; Elizabeth C Paladin; Marlana S Myers; Alexis L Smith; Molly S Grace; Thuy T Pham; Matthew B O'Brien; Amy M Vogelsberger; Andrew J Hryckowian; Jessica L Wynalek; Helen Donis-Keller; Matt W Bogel; Craig L Peebles; Steven G Cresawn; Roger W Hendrix
Journal:  J Mol Biol       Date:  2010-01-11       Impact factor: 5.469

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