Literature DB >> 19215298

Systems biology: experimental design.

Clemens Kreutz1, Jens Timmer.   

Abstract

Experimental design has a long tradition in statistics, engineering and life sciences, dating back to the beginning of the last century when optimal designs for industrial and agricultural trials were considered. In cell biology, the use of mathematical modeling approaches raises new demands on experimental planning. A maximum informative investigation of the dynamic behavior of cellular systems is achieved by an optimal combination of stimulations and observations over time. In this minireview, the existing approaches concerning this optimization for parameter estimation and model discrimination are summarized. Furthermore, the relevant classical aspects of experimental design, such as randomization, replication and confounding, are reviewed.

Mesh:

Year:  2009        PMID: 19215298     DOI: 10.1111/j.1742-4658.2008.06843.x

Source DB:  PubMed          Journal:  FEBS J        ISSN: 1742-464X            Impact factor:   5.542


  72 in total

1.  A Tutorial on Adaptive Design Optimization.

Authors:  Jay I Myung; Daniel R Cavagnaro; Mark A Pitt
Journal:  J Math Psychol       Date:  2013-06       Impact factor: 2.223

Review 2.  Genetic design automation: engineering fantasy or scientific renewal?

Authors:  Matthew W Lux; Brian W Bramlett; David A Ball; Jean Peccoud
Journal:  Trends Biotechnol       Date:  2011-10-14       Impact factor: 19.536

3.  Designing experiments to understand the variability in biochemical reaction networks.

Authors:  Jakob Ruess; Andreas Milias-Argeitis; John Lygeros
Journal:  J R Soc Interface       Date:  2013-08-28       Impact factor: 4.118

4.  Optimal Experimental Design for Systems and Synthetic Biology Using AMIGO2.

Authors:  Eva Balsa-Canto; Lucia Bandiera; Filippo Menolascina
Journal:  Methods Mol Biol       Date:  2021

5.  Proteomics analysis of date palm leaves affected at three characteristic stages of brittle leaf disease.

Authors:  Besma Sghaier-Hammami; Mohammed Najib Saidi; María Angeles Castillejo; Jesús V Jorrín-Novo; Ahmed Namsi; Noureddine Drira; Radhia Gargouri-Bouzid
Journal:  Planta       Date:  2012-07-29       Impact factor: 4.116

6.  An iterative identification procedure for dynamic modeling of biochemical networks.

Authors:  Eva Balsa-Canto; Antonio A Alonso; Julio R Banga
Journal:  BMC Syst Biol       Date:  2010-02-17

7.  Discriminating between rival biochemical network models: three approaches to optimal experiment design.

Authors:  Bence Mélykúti; Elias August; Antonis Papachristodoulou; Hana El-Samad
Journal:  BMC Syst Biol       Date:  2010-04-01

8.  When the optimal is not the best: parameter estimation in complex biological models.

Authors:  Diego Fernández Slezak; Cecilia Suárez; Guillermo A Cecchi; Guillermo Marshall; Gustavo Stolovitzky
Journal:  PLoS One       Date:  2010-10-25       Impact factor: 3.240

9.  A model invalidation-based approach for elucidating biological signalling pathways, applied to the chemotaxis pathway in R. sphaeroides.

Authors:  Mark A J Roberts; Elias August; Abdullah Hamadeh; Philip K Maini; Patrick E McSharry; Judith P Armitage; Antonis Papachristodoulou
Journal:  BMC Syst Biol       Date:  2009-10-31

10.  Optimal experimental design for parameter estimation of a cell signaling model.

Authors:  Samuel Bandara; Johannes P Schlöder; Roland Eils; Hans Georg Bock; Tobias Meyer
Journal:  PLoS Comput Biol       Date:  2009-11-06       Impact factor: 4.475

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