Literature DB >> 19205748

MapsiDB: an integrated web database for type I polyketide synthases.

Hongseok Tae1, Jae Kyung Sohng, Kiejung Park.   

Abstract

Polyketides have diverse biological activities, including pharmacological functions such as antibiotic, antitumor and agrochemical properties. They are biosynthesized from short carboxylic acid precursors by polyketide synthases (PKSs). As natural polyketide products include many clinically important drugs and the volume of data on polyketides is rapidly increasing, the development of a database system to manage polyketide data is essential. MapsiDB is an integrated web database formulated to contain data on type I polyketides and their PKSs, including domain and module composition and related genome information. Data on polyketides were collected from journals and online resources and processed with analysis programs. Web interfaces were utilized to construct and to access this database, allowing polyketide researchers to add their data to this database and to use it easily.

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Year:  2009        PMID: 19205748     DOI: 10.1007/s00449-008-0296-3

Source DB:  PubMed          Journal:  Bioprocess Biosyst Eng        ISSN: 1615-7591            Impact factor:   3.210


  7 in total

1.  Computational approaches to natural product discovery.

Authors:  Marnix H Medema; Michael A Fischbach
Journal:  Nat Chem Biol       Date:  2015-09       Impact factor: 15.040

2.  The missing linker: a dimerization motif located within polyketide synthase modules.

Authors:  Jianting Zheng; Christopher D Fage; Borries Demeler; David W Hoffman; Adrian T Keatinge-Clay
Journal:  ACS Chem Biol       Date:  2013-03-25       Impact factor: 5.100

3.  Computational identification and analysis of orphan assembly-line polyketide synthases.

Authors:  Robert V O'Brien; Ronald W Davis; Chaitan Khosla; Maureen E Hillenmeyer
Journal:  J Antibiot (Tokyo)       Date:  2013-12-04       Impact factor: 2.649

Review 4.  Culturable Microorganisms Associated with Sea Cucumbers and Microbial Natural Products.

Authors:  Lei Chen; Xiao-Yu Wang; Run-Ze Liu; Guang-Yu Wang
Journal:  Mar Drugs       Date:  2021-08-16       Impact factor: 5.118

5.  Phylogenomic and domain analysis of iterative polyketide synthases in Aspergillus species.

Authors:  Shu-Hsi Lin; Miwa Yoshimoto; Ping-Chiang Lyu; Chuan-Yi Tang; Masanori Arita
Journal:  Evol Bioinform Online       Date:  2012-07-04       Impact factor: 1.625

6.  ClusterMine360: a database of microbial PKS/NRPS biosynthesis.

Authors:  Kyle R Conway; Christopher N Boddy
Journal:  Nucleic Acids Res       Date:  2012-10-26       Impact factor: 16.971

7.  Phylogenetic and Structural Analysis of Polyketide Synthases in Aspergilli.

Authors:  Preetida J Bhetariya; Madhvi Prajapati; Asani Bhaduri; Rahul Shubhra Mandal; Anupam Varma; Taruna Madan; Yogendra Singh; P Usha Sarma
Journal:  Evol Bioinform Online       Date:  2016-05-10       Impact factor: 1.625

  7 in total

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