Literature DB >> 19199514

Many-body polarization effects and the membrane dipole potential.

Edward Harder1, Alexander D Mackerell, Benoît Roux.   

Abstract

Molecular dynamics simulations of a lipid monolayer at a water-air interface are used to investigate the dipole potential that arises at the water-lipid interface. One simulation explicitly accounts for many-body polarization effects by using a model based on classical Drude oscillators. The dipole potential of the Drude model monolayer is 0.35V in excellent agreement with experimental estimates that range between 0.3 and 0.4V, whereas, a simulation using a nonpolarizable model significantly overestimates the potential with a calculated value of 0.8V. Induced polarization effects in the nonpolar region of the monolayer are found to buffer the residual positive lipid potential that results from competing polarization effects at the polar water/monolayer interface. These results, indicate the utility of the inclusion of many-body polarization effects in empirical force field models of lipids.

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Year:  2009        PMID: 19199514      PMCID: PMC2880651          DOI: 10.1021/ja806825g

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  14 in total

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Authors:  Alexander D Mackerell
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3.  Using cryo-EM to measure the dipole potential of a lipid membrane.

Authors:  Liguo Wang; Pulkit S Bose; Fred J Sigworth
Journal:  Proc Natl Acad Sci U S A       Date:  2006-11-20       Impact factor: 11.205

4.  Are electrostatic potentials between regions of different chemical composition measurable? The Gibbs-Guggenheim Principle reconsidered, extended and its consequences revisited.

Authors:  Brian A Pethica
Journal:  Phys Chem Chem Phys       Date:  2007-10-16       Impact factor: 3.676

5.  Surface charge, surface dipoles and membrane conductance.

Authors:  D A Haydon; V B Myers
Journal:  Biochim Biophys Acta       Date:  1973-05-25

6.  Surface dipole moments of lipids at the argon-water interface. Similarities among glycerol-ester-based lipids.

Authors:  J M Smaby; H L Brockman
Journal:  Biophys J       Date:  1990-07       Impact factor: 4.033

7.  Polarizable empirical force field for alkanes based on the classical Drude oscillator model.

Authors:  Igor V Vorobyov; Victor M Anisimov; Alexander D MacKerell
Journal:  J Phys Chem B       Date:  2005-10-13       Impact factor: 2.991

8.  Membrane dipole potentials, hydration forces, and the ordering of water at membrane surfaces.

Authors:  K Gawrisch; D Ruston; J Zimmerberg; V A Parsegian; R P Rand; N Fuller
Journal:  Biophys J       Date:  1992-05       Impact factor: 4.033

9.  Biomolecular simulations of membranes: physical properties from different force fields.

Authors:  Shirley W I Siu; Robert Vácha; Pavel Jungwirth; Rainer A Böckmann
Journal:  J Chem Phys       Date:  2008-03-28       Impact factor: 3.488

Review 10.  Dipole potential of lipid membranes.

Authors:  H BROCKMAN
Journal:  Chem Phys Lipids       Date:  1994-09-06       Impact factor: 3.329

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  34 in total

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4.  The dipole potential correlates with lipid raft markers in the plasma membrane of living cells.

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Review 5.  Modeling and simulation of ion channels.

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Journal:  Chem Rev       Date:  2012-10-04       Impact factor: 60.622

6.  Force Field for Peptides and Proteins based on the Classical Drude Oscillator.

Authors:  Pedro E M Lopes; Jing Huang; Jihyun Shim; Yun Luo; Hui Li; Benoît Roux; Alexander D Mackerell
Journal:  J Chem Theory Comput       Date:  2013-12-10       Impact factor: 6.006

Review 7.  CHARMM additive and polarizable force fields for biophysics and computer-aided drug design.

Authors:  K Vanommeslaeghe; A D MacKerell
Journal:  Biochim Biophys Acta       Date:  2014-08-19

8.  Disruption and formation of surface salt bridges are coupled to DNA binding by the integration host factor: a computational analysis.

Authors:  L Ma; N K Sundlass; R T Raines; Q Cui
Journal:  Biochemistry       Date:  2010-12-15       Impact factor: 3.162

9.  Development of the CHARMM Force Field for Lipids.

Authors:  R W Pastor; A D Mackerell
Journal:  J Phys Chem Lett       Date:  2011       Impact factor: 6.475

10.  Recent Developments and Applications of the CHARMM force fields.

Authors:  Xiao Zhu; Pedro E M Lopes; Alexander D Mackerell
Journal:  Wiley Interdiscip Rev Comput Mol Sci       Date:  2011-06-28
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