Literature DB >> 19194009

Expression, purification, crystallization and preliminary X-ray diffraction analysis of the transcriptional repressor SirR from Mycobacterium tuberculosis H37Rv.

Baisakhee Saha1, Somnath Mukherjee, Debajyoti Dutta, Amit Kumar Das.   

Abstract

SirR, a metal-dependent transcriptional repressor from Mycobacterium tuberculosis (Rv2788), was cloned in pQE30 expression vector with an N-terminal His(6) tag for heterologous overexpression in Escherichia coli M15 (pREP4) cells and purified to homogeneity using chromatographic procedures. The purified protein was crystallized using the sitting-drop vapour-diffusion technique. The crystals belonged to the tetragonal space group P4(1)2(1)2/P4(3)2(1)2, with unit-cell parameters a = 105.21, b = 105.21, c = 144.85 A. The X-ray diffraction data were processed to a maximum resolution of 2.5 A. The Matthews coefficient suggests the presence of two (V(M) = 4.01 A(3) Da(-1)) to four (V(M) = 2.0 A(3) Da(-1)) molecules in the asymmetric unit. Calculation of the self-rotation function shows a crystallographic fourfold symmetry axis along the z axis (chi = 90 degrees) and also a twofold symmetry axis around the z axis (chi = 180 degrees).

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Year:  2009        PMID: 19194009      PMCID: PMC2635875          DOI: 10.1107/S1744309108043534

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  19 in total

Review 1.  Mechanisms of iron regulation in mycobacteria: role in physiology and virulence.

Authors:  G Marcela Rodriguez; Issar Smith
Journal:  Mol Microbiol       Date:  2003-03       Impact factor: 3.501

2.  Both Corynebacterium diphtheriae DtxR(E175K) and Mycobacterium tuberculosis IdeR(D177K) are dominant positive repressors of IdeR-regulated genes in M. tuberculosis.

Authors:  Yukari C Manabe; Christine L Hatem; Anup K Kesavan; Justin Durack; John R Murphy
Journal:  Infect Immun       Date:  2005-09       Impact factor: 3.441

3.  Crystal structure and function of the zinc uptake regulator FurB from Mycobacterium tuberculosis.

Authors:  Debora Lucarelli; Santina Russo; Elspeth Garman; Anna Milano; Wolfram Meyer-Klaucke; Ehmke Pohl
Journal:  J Biol Chem       Date:  2007-01-09       Impact factor: 5.157

4.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

5.  The Mycobacterium tuberculosis IdeR is a dual functional regulator that controls transcription of genes involved in iron acquisition, iron storage and survival in macrophages.

Authors:  B Gold; G M Rodriguez; S A Marras; M Pentecost; I Smith
Journal:  Mol Microbiol       Date:  2001-11       Impact factor: 3.501

6.  Transcriptional regulation of furA and katG upon oxidative stress in Mycobacterium smegmatis.

Authors:  A Milano; F Forti; C Sala; G Riccardi; D Ghisotti
Journal:  J Bacteriol       Date:  2001-12       Impact factor: 3.490

7.  Mycobacterial FurA is a negative regulator of catalase-peroxidase gene katG.

Authors:  T C Zahrt; J Song; J Siple; V Deretic
Journal:  Mol Microbiol       Date:  2001-03       Impact factor: 3.501

8.  SirR, a novel iron-dependent repressor in Staphylococcus epidermidis.

Authors:  P J Hill; A Cockayne; P Landers; J A Morrissey; C M Sims; P Williams
Journal:  Infect Immun       Date:  1998-09       Impact factor: 3.441

9.  Crystal structure of the iron-dependent regulator (IdeR) from Mycobacterium tuberculosis shows both metal binding sites fully occupied.

Authors:  E Pohl; R K Holmes; W G Hol
Journal:  J Mol Biol       Date:  1999-01-22       Impact factor: 5.469

10.  Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence.

Authors:  S T Cole; R Brosch; J Parkhill; T Garnier; C Churcher; D Harris; S V Gordon; K Eiglmeier; S Gas; C E Barry; F Tekaia; K Badcock; D Basham; D Brown; T Chillingworth; R Connor; R Davies; K Devlin; T Feltwell; S Gentles; N Hamlin; S Holroyd; T Hornsby; K Jagels; A Krogh; J McLean; S Moule; L Murphy; K Oliver; J Osborne; M A Quail; M A Rajandream; J Rogers; S Rutter; K Seeger; J Skelton; R Squares; S Squares; J E Sulston; K Taylor; S Whitehead; B G Barrell
Journal:  Nature       Date:  1998-06-11       Impact factor: 49.962

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