Literature DB >> 19190716

Computational studies of the O(2)-evolving complex of photosystem II and biomimetic oxomanganese complexes.

Eduardo M Sproviero1, José A Gascón, James P McEvoy, Gary W Brudvig, Victor S Batista.   

Abstract

In recent years, there has been considerable interest in studies of catalytic metal clusters in metalloproteins based on Density Functional Theory (DFT) quantum mechanics/molecular mechanics (QM/MM) hybrid methods. These methods explicitly include the perturbational influence of the surrounding protein environment on the structural/functional properties of the catalytic centers. In conjunction with recent breakthroughs in X-ray crystallography and advances in spectroscopic and biophysical studies, computational chemists are trying to understand the structural and mechanistic properties of the oxygen-evolving complex (OEC) embedded in photosystem II (PSII). Recent studies include the development of DFT-QM/MM computational models of the Mn(4)Ca cluster, responsible for photosynthetic water oxidation, and comparative quantum mechanical studies of biomimetic oxomanganese complexes. A number of computational models, varying in oxidation and protonation states and ligation of the catalytic center by amino acid residues, water, hydroxide and chloride have been characterized along the PSII catalytic cycle of water splitting. The resulting QM/MM models are consistent with available mechanistic data, Fourier-transform infrared (FTIR) spectroscopy, X-ray diffraction data and extended X-ray absorption fine structure (EXAFS) measurements. Here, we review these computational efforts focused towards understanding the catalytic mechanism of water oxidation at the detailed molecular level.

Entities:  

Year:  2008        PMID: 19190716      PMCID: PMC2350217          DOI: 10.1016/j.ccr.2007.09.006

Source DB:  PubMed          Journal:  Coord Chem Rev        ISSN: 0010-8545            Impact factor:   22.315


  116 in total

1.  Stoichiometry of proton release from the catalytic center in photosynthetic water oxidation. Reexamination by a glass electrode study at ph 5.5-7.2.

Authors:  E Schlodder; H T Witt
Journal:  J Biol Chem       Date:  1999-10-22       Impact factor: 5.157

2.  Crystal structure of oxygen-evolving photosystem II from Thermosynechococcus vulcanus at 3.7-A resolution.

Authors:  Nobuo Kamiya; Jian-Ren Shen
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-23       Impact factor: 11.205

3.  Pulse EPR, 55Mn-ENDOR and ELDOR-detected NMR of the S2-state of the oxygen evolving complex in photosystem II.

Authors:  Leonid Kulik; Boris Epel; Johannes Messinger; Wolfgang Lubitz
Journal:  Photosynth Res       Date:  2005-06       Impact factor: 3.573

4.  Proton release during the redox cycle of the water oxidase.

Authors:  J Lavergne; W Junge
Journal:  Photosynth Res       Date:  1993-01       Impact factor: 3.573

5.  The photosynthetic oxygen evolving complex requires chloride for its redox state S2-->S3 and S3-->S0 transitions but not for S0-->S1 or S1-->S2 transitions.

Authors:  H Wincencjusz; H J van Gorkom; C F Yocum
Journal:  Biochemistry       Date:  1997-03-25       Impact factor: 3.162

6.  Site-directed mutagenesis of basic arginine residues 305 and 342 in the CP 43 protein of photosystem II affects oxygen-evolving activity in Synechocystis 6803.

Authors:  N Knoepfle; T M Bricker; C Putnam-Evans
Journal:  Biochemistry       Date:  1999-02-02       Impact factor: 3.162

7.  Role of D1-His190 in the proton-coupled oxidation of tyrosine YZ in manganese-depleted photosystem II.

Authors:  A M Hays; I R Vassiliev; J H Golbeck; R J Debus
Journal:  Biochemistry       Date:  1999-09-14       Impact factor: 3.162

8.  Photosynthetic oxygen evolution: net charge transients as inferred from electrochromic bandshifts are independent of proton release into the medium.

Authors:  M Haumann; O Bögershausen; W Junge
Journal:  FEBS Lett       Date:  1994-11-21       Impact factor: 4.124

9.  A functional model for O-O bond formation by the O2-evolving complex in photosystem II.

Authors:  J Limburg; J S Vrettos; L M Liable-Sands; A L Rheingold; R H Crabtree; G W Brudvig
Journal:  Science       Date:  1999-03-05       Impact factor: 47.728

10.  Lumenal side histidine mutations in the D1 protein of Photosystem II affect donor side electron transfer in Chlamydomonas reinhardtii.

Authors:  R A Roffey; D M Kramer; R T Sayre
Journal:  Biochim Biophys Acta       Date:  1994-05-18
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  27 in total

1.  Synthetic model of the asymmetric [Mn3CaO4] cubane core of the oxygen-evolving complex of photosystem II.

Authors:  Shreya Mukherjee; Jamie A Stull; Junko Yano; Theocharis C Stamatatos; Konstantina Pringouri; Troy A Stich; Khalil A Abboud; R David Britt; Vittal K Yachandra; George Christou
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-30       Impact factor: 11.205

Review 2.  Proton-coupled electron transfer.

Authors:  My Hang V Huynh; Thomas J Meyer
Journal:  Chem Rev       Date:  2007-11       Impact factor: 60.622

3.  A possible evolutionary origin for the Mn4 cluster in photosystem II: from manganese superoxide dismutase to oxygen evolving complex.

Authors:  M Mahdi Najafpour
Journal:  Orig Life Evol Biosph       Date:  2009-01-16       Impact factor: 1.950

Review 4.  Uncovering channels in photosystem II by computer modelling: current progress, future prospects, and lessons from analogous systems.

Authors:  Felix M Ho
Journal:  Photosynth Res       Date:  2008-09-17       Impact factor: 3.573

5.  From natural to artificial photosynthesis.

Authors:  James Barber; Phong D Tran
Journal:  J R Soc Interface       Date:  2013-01-30       Impact factor: 4.118

Review 6.  Nano-sized manganese oxides as biomimetic catalysts for water oxidation in artificial photosynthesis: a review.

Authors:  Mohammad Mahdi Najafpour; Fahimeh Rahimi; Eva-Mari Aro; Choon-Hwan Lee; Suleyman I Allakhverdiev
Journal:  J R Soc Interface       Date:  2012-07-18       Impact factor: 4.118

7.  Structural-functional role of chloride in photosystem II.

Authors:  Ivan Rivalta; Muhamed Amin; Sandra Luber; Serguei Vassiliev; Ravi Pokhrel; Yasufumi Umena; Keisuke Kawakami; Jian-Ren Shen; Nobuo Kamiya; Doug Bruce; Gary W Brudvig; M R Gunner; Victor S Batista
Journal:  Biochemistry       Date:  2011-06-27       Impact factor: 3.162

Review 8.  The MOD-QM/MM Method: Applications to Studies of Photosystem II and DNA G-Quadruplexes.

Authors:  M Askerka; J Ho; E R Batista; J A Gascón; V S Batista
Journal:  Methods Enzymol       Date:  2016-07-15       Impact factor: 1.600

9.  Synthetic cluster models of biological and heterogeneous manganese catalysts for O2 evolution.

Authors:  Emily Y Tsui; Jacob S Kanady; Theodor Agapie
Journal:  Inorg Chem       Date:  2013-12-16       Impact factor: 5.165

10.  A model of the oxygen-evolving center of photosystem II predicted by structural refinement based on EXAFS simulations.

Authors:  Eduardo M Sproviero; José A Gascón; James P McEvoy; Gary W Brudvig; Victor S Batista
Journal:  J Am Chem Soc       Date:  2008-05-06       Impact factor: 15.419

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