Literature DB >> 19187763

An unexpected type of ribosomes induced by kasugamycin: a look into ancestral times of protein synthesis?

Anna Chao Kaberdina1, Witold Szaflarski, Knud H Nierhaus, Isabella Moll.   

Abstract

Translation of leaderless mRNAs, lacking ribosomal recruitment signals other than the 5'-terminal AUG-initiating codon, occurs in all three domains of life. Contemporary leaderless mRNAs may therefore be viewed as molecular fossils resembling ancestral mRNAs. Here, we analyzed the phenomenon of sustained translation of a leaderless mRNA in the presence of the antibiotic kasugamycin. Unexpected from the known in vitro effects of the drug, kasugamycin induced the formation of stable approximately 61S ribosomes in vivo, which were proficient in selectively translating leaderless mRNA. 61S particles are devoid of more than six proteins of the small subunit, including the functionally important proteins S1 and S12. The lack of these proteins could be reconciled with structural changes in the 16S rRNA. These studies provide in vivo evidence for the functionality of ribosomes devoid of multiple proteins and shed light on the evolutionary history of ribosomes.

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Year:  2009        PMID: 19187763      PMCID: PMC2967816          DOI: 10.1016/j.molcel.2008.12.014

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  52 in total

Review 1.  Initiation of protein synthesis in bacteria.

Authors:  Brian Søgaard Laursen; Hans Peter Sørensen; Kim Kusk Mortensen; Hans Uffe Sperling-Petersen
Journal:  Microbiol Mol Biol Rev       Date:  2005-03       Impact factor: 11.056

Review 2.  Ribosomal proteins in the spotlight.

Authors:  Daniel N Wilson; Knud H Nierhaus
Journal:  Crit Rev Biochem Mol Biol       Date:  2005 Sep-Oct       Impact factor: 8.250

3.  The adenosine dimethyltransferase KsgA recognizes a specific conformational state of the 30S ribosomal subunit.

Authors:  Pooja M Desai; Jason P Rife
Journal:  Arch Biochem Biophys       Date:  2006-03-29       Impact factor: 4.013

4.  Mutational analysis of S12 protein and implications for the accuracy of decoding by the ribosome.

Authors:  Divya Sharma; Anthony R Cukras; Elizabeth J Rogers; Daniel R Southworth; Rachel Green
Journal:  J Mol Biol       Date:  2007-10-06       Impact factor: 5.469

Review 5.  A structural understanding of the dynamic ribosome machine.

Authors:  Thomas A Steitz
Journal:  Nat Rev Mol Cell Biol       Date:  2008-03       Impact factor: 94.444

6.  Nucleic acid binding properties of Escherichia coli ribosomal protein S1. I. Structure and interactions of binding site I.

Authors:  D E Draper; P H von Hippel
Journal:  J Mol Biol       Date:  1978-07-05       Impact factor: 5.469

7.  Structural analysis of kasugamycin inhibition of translation.

Authors:  Barbara S Schuwirth; J Michael Day; Cathy W Hau; Gary R Janssen; Albert E Dahlberg; Jamie H Doudna Cate; Antón Vila-Sanjurjo
Journal:  Nat Struct Mol Biol       Date:  2006-09-24       Impact factor: 15.369

8.  The antibiotic kasugamycin mimics mRNA nucleotides to destabilize tRNA binding and inhibit canonical translation initiation.

Authors:  Frank Schluenzen; Chie Takemoto; Daniel N Wilson; Tatsuya Kaminishi; Joerg M Harms; Kyoko Hanawa-Suetsugu; Witold Szaflarski; Masahito Kawazoe; Mikako Shirouzu; Mikako Shirouzo; Knud H Nierhaus; Shigeyuki Yokoyama; Paola Fucini
Journal:  Nat Struct Mol Biol       Date:  2006-09-24       Impact factor: 15.369

9.  Solution probing of metal ion binding by helix 27 from Escherichia coli 16S rRNA.

Authors:  Meredith Newby Lambert; John A H Hoerter; Miguel J B Pereira; Nils G Walter
Journal:  RNA       Date:  2005-11       Impact factor: 4.942

10.  Characterization of a 30S ribosomal subunit assembly intermediate found in Escherichia coli cells growing with neomycin or paromomycin.

Authors:  Cerrone Foster; W Scott Champney
Journal:  Arch Microbiol       Date:  2007-12-05       Impact factor: 2.552

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  56 in total

1.  A 5'-terminal phosphate is required for stable ternary complex formation and translation of leaderless mRNA in Escherichia coli.

Authors:  Jacqueline Giliberti; Sean O'Donnell; William J Van Etten; Gary R Janssen
Journal:  RNA       Date:  2012-01-30       Impact factor: 4.942

2.  Mechanisms of the initiation of protein synthesis: in reading frame binding of ribosomes to mRNA.

Authors:  Tokumasa Nakamoto
Journal:  Mol Biol Rep       Date:  2010-05-14       Impact factor: 2.316

Review 3.  Translation initiation: variations in the mechanism can be anticipated.

Authors:  Naglis Malys; John E G McCarthy
Journal:  Cell Mol Life Sci       Date:  2010-11-13       Impact factor: 9.261

4.  The impact of non-coding RNAs: workshop on new functions of regulatory RNAs in pro- & eukaryotes.

Authors:  Jennifer L Boots; Isabella Moll
Journal:  EMBO Rep       Date:  2009-05-22       Impact factor: 8.807

5.  Control of glutamate receptor 2 (GluR2) translational initiation by its alternative 3' untranslated regions.

Authors:  Hasan A Irier; Yi Quan; Justin Yoo; Raymond Dingledine
Journal:  Mol Pharmacol       Date:  2009-09-30       Impact factor: 4.436

6.  Is the cellular initiation of translation an exclusive property of the initiator tRNAs?

Authors:  Sunil Shetty; Souvik Bhattacharyya; Umesh Varshney
Journal:  RNA Biol       Date:  2015       Impact factor: 4.652

7.  Deep sequencing-based identification of small non-coding RNAs in Streptomyces coelicolor.

Authors:  Michael-Paul Vockenhuber; Cynthia M Sharma; Michaela G Statt; Denis Schmidt; Zhenjiang Xu; Sascha Dietrich; Heiko Liesegang; David H Mathews; Beatrix Suess
Journal:  RNA Biol       Date:  2011-05-01       Impact factor: 4.652

8.  In vivo biochemistry in bacterial cells using FRAP: insight into the translation cycle.

Authors:  Paula Montero Llopis; Oleksii Sliusarenko; Jennifer Heinritz; Christine Jacobs-Wagner
Journal:  Biophys J       Date:  2012-11-07       Impact factor: 4.033

9.  Coevolution of the translational machinery optimizes initiation with unusual initiator tRNAs and initiation codons in mycoplasmas.

Authors:  Shreya Ahana Ayyub; Divya Dobriyal; Riyaz Ahmad Shah; Kuldeep Lahry; Madhumita Bhattacharyya; Souvik Bhattacharyya; Saikat Chakrabarti; Umesh Varshney
Journal:  RNA Biol       Date:  2017-09-29       Impact factor: 4.652

10.  Structural basis for the methylation of G1405 in 16S rRNA by aminoglycoside resistance methyltransferase Sgm from an antibiotic producer: a diversity of active sites in m7G methyltransferases.

Authors:  Nilofer Husain; Karolina L Tkaczuk; Shenoy Rajesh Tulsidas; Katarzyna H Kaminska; Sonja Cubrilo; Gordana Maravić-Vlahovicek; Janusz M Bujnicki; J Sivaraman
Journal:  Nucleic Acids Res       Date:  2010-03-01       Impact factor: 16.971

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