Literature DB >> 19181685

NOBLAST and JAMBLAST: New Options for BLAST and a Java Application Manager for BLAST results.

Jacques Lagnel1, Costas S Tsigenopoulos, Ioannis Iliopoulos.   

Abstract

UNLABELLED: NOBLAST (New Options for BLAST) is an open source program that provides a new user-friendly tabular output format for various NCBI BLAST programs (Blastn, Blastp, Blastx, Tblastn, Tblastx, Mega BLAST and Psi BLAST) without any use of a parser and provides E-value correction in case of use of segmented BLAST database. JAMBLAST using the NOBLAST output allows the user to manage, view and filter the BLAST hits using a number of selection criteria. AVAILABILITY: A distribution package of NOBLAST and JAMBLAST including detailed installation procedure is freely available from http://sourceforge.net/projects/JAMBLAST/ and http://sourceforge.net/projects/NOBLAST. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.

Mesh：

Year:  2009        PMID： 19181685     DOI： 10.1093/bioinformatics/btp067

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  12 in total

1.  The PARIGA server for real time filtering and analysis of reciprocal BLAST results.

Authors:  Massimiliano Orsini; Simone Carcangiu; Gianmauro Cuccuru; Paolo Uva; Anna Tramontano
Journal:  PLoS One       Date:  2013-05-07       Impact factor: 3.240

2.  Transcriptome Profiling and Genetic Study Reveal Amplified Carboxylesterase Genes Implicated in Temephos Resistance, in the Asian Tiger Mosquito Aedes albopictus.

Authors:  Linda Grigoraki; Jacques Lagnel; Ilias Kioulos; Anastasia Kampouraki; Evangelia Morou; Pierrick Labbé; Mylene Weill; John Vontas
Journal:  PLoS Negl Trop Dis       Date:  2015-05-22

3.  BlasterJS: A novel interactive JavaScript visualisation component for BLAST alignment results.

Authors:  Aitor Blanco-Míguez; Florentino Fdez-Riverola; Borja Sánchez; Anália Lourenço
Journal:  PLoS One       Date:  2018-10-09       Impact factor: 3.240

4.  The Gene Toolkit Implicated in Functional Sex in Sparidae Hermaphrodites: Inferences From Comparative Transcriptomics.

Authors:  Alexandros Tsakogiannis; Tereza Manousaki; Jacques Lagnel; Nikolaos Papanikolaou; Nikos Papandroulakis; Constantinos C Mylonas; Costas S Tsigenopoulos
Journal:  Front Genet       Date:  2019-01-18       Impact factor: 4.599

5.  BlaSTorage: a fast package to parse, manage and store BLAST results.

Authors:  Massimiliano Orsini; Simone Carcangiu
Journal:  Source Code Biol Med       Date:  2013-01-30

6.  BLASTGrabber: a bioinformatic tool for visualization, analysis and sequence selection of massive BLAST data.

Authors:  Ralf Stefan Neumann; Surendra Kumar; Thomas Hendricus Augustus Haverkamp; Kamran Shalchian-Tabrizi
Journal:  BMC Bioinformatics       Date:  2014-05-05       Impact factor: 3.169

7.  The sex-specific transcriptome of the hermaphrodite sparid sharpsnout seabream (Diplodus puntazzo).

Authors:  Tereza Manousaki; Alexandros Tsakogiannis; Jacques Lagnel; Elena Sarropoulou; Jenny Z Xiang; Nikos Papandroulakis; Constantinos C Mylonas; Costas S Tsigenopoulos
Journal:  BMC Genomics       Date:  2014-08-06       Impact factor: 3.969

8.  Transcription analysis of neonicotinoid resistance in Mediterranean (MED) populations of B. tabaci reveal novel cytochrome P450s, but no nAChR mutations associated with the phenotype.

Authors:  Aris Ilias; Jacques Lagnel; Despoina E Kapantaidaki; Emmanouil Roditakis; Costas S Tsigenopoulos; John Vontas; Anastasia Tsagkarakou
Journal:  BMC Genomics       Date:  2015-11-14       Impact factor: 3.969

9.  The transcriptomic signature of different sexes in two protogynous hermaphrodites: Insights into the molecular network underlying sex phenotype in fish.

Authors:  A Tsakogiannis; T Manousaki; J Lagnel; A Sterioti; M Pavlidis; N Papandroulakis; C C Mylonas; C S Tsigenopoulos
Journal:  Sci Rep       Date:  2018-02-23       Impact factor: 4.379

10.  Genomic analysis of Sparus aurata reveals the evolutionary dynamics of sex-biased genes in a sequential hermaphrodite fish.

Authors:  Marianna Pauletto; Tereza Manousaki; Serena Ferraresso; Massimiliano Babbucci; Alexandros Tsakogiannis; Bruno Louro; Nicola Vitulo; Viet Ha Quoc; Roberta Carraro; Daniela Bertotto; Rafaella Franch; Francesco Maroso; Muhammad L Aslam; Anna K Sonesson; Barbara Simionati; Giorgio Malacrida; Alessandro Cestaro; Stefano Caberlotto; Elena Sarropoulou; Costantinos C Mylonas; Deborah M Power; Tomaso Patarnello; Adelino V M Canario; Costas Tsigenopoulos; Luca Bargelloni
Journal:  Commun Biol       Date:  2018-08-17
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