Literature DB >> 19180117

Triggering the formation of tasiRNAs in Arabidopsis thaliana: the role of microRNA miR173.

Felipe F Felippes1, Detlef Weigel.   

Abstract

Trans-acting small interfering RNAs (tasiRNAs) comprise a class of endogenous small RNAs that are generated from TAS gene-derived transcripts after these are cleaved at a microRNA (miRNA) target site. Arabidopsis thaliana has four families of TAS genes: miR173 triggers tasiRNA production from TAS1 and TAS2, miR390 from TAS3 and miR828 from TAS4. The two-hit trigger model postulates that dual target sites in the same transcript are often sufficient to initiate tasiRNA production, but two hits are not always required for tasiRNA formation. Here, we characterize the function of miR173 in the formation of tasiRNAs from TAS1 transcripts, as well as the importance of the TAS1 and TAS3 transcript sequences outside the miRNA-targeting sites for tasiRNA production. We show that tasiRNAs can be produced from heterologous transcripts containing miR173 or miR390 target sites, indicating that these trigger sequences are the only cis sequences essential for tasiRNA formation.

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Year:  2009        PMID: 19180117      PMCID: PMC2658565          DOI: 10.1038/embor.2008.247

Source DB:  PubMed          Journal:  EMBO Rep        ISSN: 1469-221X            Impact factor:   8.807


  23 in total

1.  microRNA-directed phasing during trans-acting siRNA biogenesis in plants.

Authors:  Edwards Allen; Zhixin Xie; Adam M Gustafson; James C Carrington
Journal:  Cell       Date:  2005-04-22       Impact factor: 41.582

2.  A pathway for the biogenesis of trans-acting siRNAs in Arabidopsis.

Authors:  Manabu Yoshikawa; Angela Peragine; Mee Yeon Park; R Scott Poethig
Journal:  Genes Dev       Date:  2005-08-30       Impact factor: 11.361

3.  Distinct catalytic and non-catalytic roles of ARGONAUTE4 in RNA-directed DNA methylation.

Authors:  Yijun Qi; Xingyue He; Xiu-Jie Wang; Oleksiy Kohany; Jerzy Jurka; Gregory J Hannon
Journal:  Nature       Date:  2006-09-24       Impact factor: 49.962

4.  A two-hit trigger for siRNA biogenesis in plants.

Authors:  Michael J Axtell; Calvin Jan; Ramya Rajagopalan; David P Bartel
Journal:  Cell       Date:  2006-11-03       Impact factor: 41.582

5.  Highly specific gene silencing by artificial microRNAs in Arabidopsis.

Authors:  Rebecca Schwab; Stephan Ossowski; Markus Riester; Norman Warthmann; Detlef Weigel
Journal:  Plant Cell       Date:  2006-03-10       Impact factor: 11.277

6.  Biochemical specialization within Arabidopsis RNA silencing pathways.

Authors:  Yijun Qi; Ahmet M Denli; Gregory J Hannon
Journal:  Mol Cell       Date:  2005-08-05       Impact factor: 17.970

7.  Partially redundant functions of Arabidopsis DICER-like enzymes and a role for DCL4 in producing trans-acting siRNAs.

Authors:  Virginie Gasciolli; Allison C Mallory; David P Bartel; Hervé Vaucheret
Journal:  Curr Biol       Date:  2005-08-23       Impact factor: 10.834

8.  A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana.

Authors:  Ramya Rajagopalan; Hervé Vaucheret; Jerry Trejo; David P Bartel
Journal:  Genes Dev       Date:  2006-12-15       Impact factor: 11.361

9.  Genome-wide analysis of the RNA-DEPENDENT RNA POLYMERASE6/DICER-LIKE4 pathway in Arabidopsis reveals dependency on miRNA- and tasiRNA-directed targeting.

Authors:  Miya D Howell; Noah Fahlgren; Elisabeth J Chapman; Jason S Cumbie; Christopher M Sullivan; Scott A Givan; Kristin D Kasschau; James C Carrington
Journal:  Plant Cell       Date:  2007-03-30       Impact factor: 11.277

10.  DICER-LIKE 4 functions in trans-acting small interfering RNA biogenesis and vegetative phase change in Arabidopsis thaliana.

Authors:  Zhixin Xie; Edwards Allen; April Wilken; James C Carrington
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-29       Impact factor: 11.205

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  54 in total

1.  MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs.

Authors:  Jixian Zhai; Dong-Hoon Jeong; Emanuele De Paoli; Sunhee Park; Benjamin D Rosen; Yupeng Li; Alvaro J González; Zhe Yan; Sherry L Kitto; Michael A Grusak; Scott A Jackson; Gary Stacey; Douglas R Cook; Pamela J Green; D Janine Sherrier; Blake C Meyers
Journal:  Genes Dev       Date:  2011-12-01       Impact factor: 11.361

2.  Plant secondary siRNA production determined by microRNA-duplex structure.

Authors:  Pablo A Manavella; Daniel Koenig; Detlef Weigel
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-30       Impact factor: 11.205

3.  Putative Arabidopsis THO/TREX mRNA export complex is involved in transgene and endogenous siRNA biosynthesis.

Authors:  Nataliya E Yelina; Lisa M Smith; Alexandra M E Jones; Kanu Patel; Krystyna A Kelly; David C Baulcombe
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-15       Impact factor: 11.205

4.  22-Nucleotide RNAs trigger secondary siRNA biogenesis in plants.

Authors:  Ho-Ming Chen; Li-Teh Chen; Kanu Patel; Yi-Hang Li; David C Baulcombe; Shu-Hsing Wu
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-19       Impact factor: 11.205

Review 5.  Form, function, and regulation of ARGONAUTE proteins.

Authors:  Allison Mallory; Hervé Vaucheret
Journal:  Plant Cell       Date:  2010-12-23       Impact factor: 11.277

6.  Differential effects of viral silencing suppressors on siRNA and miRNA loading support the existence of two distinct cellular pools of ARGONAUTE1.

Authors:  Gregory Schott; Arturo Mari-Ordonez; Christophe Himber; Abdelmalek Alioua; Olivier Voinnet; Patrice Dunoyer
Journal:  EMBO J       Date:  2012-04-24       Impact factor: 11.598

7.  Efficient transformation and artificial miRNA gene silencing in Lemna minor.

Authors:  A Cantó-Pastor; A Mollá-Morales; E Ernst; W Dahl; J Zhai; Y Yan; B C Meyers; J Shanklin; R Martienssen
Journal:  Plant Biol (Stuttg)       Date:  2014-07-02       Impact factor: 3.081

8.  Roles of dicer-like and argonaute proteins in TAS-derived small interfering RNA-triggered DNA methylation.

Authors:  Liang Wu; Long Mao; Yijun Qi
Journal:  Plant Physiol       Date:  2012-07-30       Impact factor: 8.340

9.  Genome-wide profiling of populus small RNAs.

Authors:  Daniel Klevebring; Nathaniel R Street; Noah Fahlgren; Kristin D Kasschau; James C Carrington; Joakim Lundeberg; Stefan Jansson
Journal:  BMC Genomics       Date:  2009-12-20       Impact factor: 3.969

10.  MicroRNA and tasiRNA diversity in mature pollen of Arabidopsis thaliana.

Authors:  Robert Grant-Downton; Gael Le Trionnaire; Ralf Schmid; Josefina Rodriguez-Enriquez; Said Hafidh; Saher Mehdi; David Twell; Hugh Dickinson
Journal:  BMC Genomics       Date:  2009-12-30       Impact factor: 3.969

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