Literature DB >> 19179708

Initializing partition-optimization algorithms.

Ranjan Maitra1.   

Abstract

Clustering datasets is a challenging problem needed in a wide array of applications. Partition-optimization approaches, such as k-means or expectation-maximization (EM) algorithms, are sub-optimal and find solutions in the vicinity of their initialization. This paper proposes a staged approach to specifying initial values by finding a large number of local modes and then obtaining representatives from the most separated ones. Results on test experiments are excellent. We also provide a detailed comparative assessment of the suggested algorithm with many commonly-used initialization approaches in the literature. Finally, the methodology is applied to two datasets on diurnal microarray gene expressions and industrial releases of mercury.

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Year:  2009        PMID: 19179708     DOI: 10.1109/TCBB.2007.70244

Source DB:  PubMed          Journal:  IEEE/ACM Trans Comput Biol Bioinform        ISSN: 1545-5963            Impact factor:   3.710


  7 in total

1.  Merging K-means with hierarchical clustering for identifying general-shaped groups.

Authors:  Anna D Peterson; Arka P Ghosh; Ranjan Maitra
Journal:  Stat (Int Stat Inst)       Date:  2018-01-17

2.  On the Expectation-Maximization Algorithm for Rice-Rayleigh Mixtures With Application to Noise Parameter Estimation in Magnitude MR Datasets.

Authors:  Ranjan Maitra
Journal:  Sankhya B (2008)       Date:  2013-01-22

3.  Mode Estimation for High Dimensional Discrete Tree Graphical Models.

Authors:  Chao Chen; Han Liu; Dimitris N Metaxas; Tianqi Zhao
Journal:  Adv Neural Inf Process Syst       Date:  2014-12

4.  Adipose tissue MRI for quantitative measurement of central obesity.

Authors:  Aziz H Poonawalla; Brett P Sjoberg; Jennifer L Rehm; Diego Hernando; Catherine D Hines; Pablo Irarrazaval; Scott B Reeder
Journal:  J Magn Reson Imaging       Date:  2012-10-10       Impact factor: 4.813

5.  Improved initialisation of model-based clustering using Gaussian hierarchical partitions.

Authors:  Luca Scrucca; Adrian E Raftery
Journal:  Adv Data Anal Classif       Date:  2015-10-26

6.  Effects of Initial Values and Convergence Criterion in the Two-Parameter Logistic Model When Estimating the Latent Distribution in BILOG-MG 3.

Authors:  Ingo W Nader; Ulrich S Tran; Martin Voracek
Journal:  PLoS One       Date:  2015-10-09       Impact factor: 3.240

7.  m6aViewer: software for the detection, analysis, and visualization of N6-methyladenosine peaks from m6A-seq/ME-RIP sequencing data.

Authors:  Agne Antanaviciute; Belinda Baquero-Perez; Christopher M Watson; Sally M Harrison; Carolina Lascelles; Laura Crinnion; Alexander F Markham; David T Bonthron; Adrian Whitehouse; Ian M Carr
Journal:  RNA       Date:  2017-07-19       Impact factor: 4.942

  7 in total

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