Literature DB >> 19179697

Hybridization in nonbinary trees.

Simone Linz1, Charles Semple.   

Abstract

Reticulate evolution--the umbrella term for processes like hybridization, horizontal gene transfer, and recombination--plays an important role in the history of life of many species. Although the occurrence of such events is widely accepted, approaches to calculate the extent to which reticulation has influenced evolution are relatively rare. In this paper, we show that the NP-hard problem of calculating the minimum number of reticulation events for two (arbitrary) rooted phylogenetic trees parameterized by this minimum number is fixed-parameter tractable.

Mesh:

Year:  2009        PMID: 19179697     DOI: 10.1109/TCBB.2008.86

Source DB:  PubMed          Journal:  IEEE/ACM Trans Comput Biol Bioinform        ISSN: 1545-5963            Impact factor:   3.710


  5 in total

1.  Phylogenetic networks do not need to be complex: using fewer reticulations to represent conflicting clusters.

Authors:  Leo van Iersel; Steven Kelk; Regula Rupp; Daniel Huson
Journal:  Bioinformatics       Date:  2010-06-15       Impact factor: 6.937

2.  Close lower and upper bounds for the minimum reticulate network of multiple phylogenetic trees.

Authors:  Yufeng Wu
Journal:  Bioinformatics       Date:  2010-06-15       Impact factor: 6.937

3.  Supertrees Based on the Subtree Prune-and-Regraft Distance.

Authors:  Christopher Whidden; Norbert Zeh; Robert G Beiko
Journal:  Syst Biol       Date:  2014-04-02       Impact factor: 15.683

4.  A practical approximation algorithm for solving massive instances of hybridization number for binary and nonbinary trees.

Authors:  Leo van Iersel; Steven Kelk; Nela Lekić; Celine Scornavacca
Journal:  BMC Bioinformatics       Date:  2014-05-05       Impact factor: 3.169

5.  Frin: An Efficient Method for Representing Genome Evolutionary History.

Authors:  Yan Hong; Juan Wang
Journal:  Front Genet       Date:  2019-12-06       Impact factor: 4.599

  5 in total

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