Literature DB >> 19175102

A genetic algorithm for variable selection in logistic regression analysis of radiotherapy treatment outcomes.

Olivier Gayou1, Shiva K Das, Su-Min Zhou, Lawrence B Marks, David S Parda, Moyed Miften.   

Abstract

A given outcome of radiotherapy treatment can be modeled by analyzing its correlation with a combination of dosimetric, physiological, biological, and clinical factors, through a logistic regression fit of a large patient population. The quality of the fit is measured by the combination of the predictive power of this particular set of factors and the statistical significance of the individual factors in the model. We developed a genetic algorithm (GA), in which a small sample of all the possible combinations of variables are fitted to the patient data. New models are derived from the best models, through crossover and mutation operations, and are in turn fitted. The process is repeated until the sample converges to the combination of factors that best predicts the outcome. The GA was tested on a data set that investigated the incidence of lung injury in NSCLC patients treated with 3DCRT. The GA identified a model with two variables as the best predictor of radiation pneumonitis: the V30 (p=0.048) and the ongoing use of tobacco at the time of referral (p=0.074). This two-variable model was confirmed as the best model by analyzing all possible combinations of factors. In conclusion, genetic algorithms provide a reliable and fast way to select significant factors in logistic regression analysis of large clinical studies.

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Year:  2008        PMID: 19175102      PMCID: PMC2673619          DOI: 10.1118/1.3005974

Source DB:  PubMed          Journal:  Med Phys        ISSN: 0094-2405            Impact factor:   4.071


  20 in total

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Journal:  Int J Radiat Oncol Biol Phys       Date:  1991-05-15       Impact factor: 7.038

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4.  Genetic algorithms: principles of natural selection applied to computation.

Authors:  S Forrest
Journal:  Science       Date:  1993-08-13       Impact factor: 47.728

5.  A method of comparing the areas under receiver operating characteristic curves derived from the same cases.

Authors:  J A Hanley; B J McNeil
Journal:  Radiology       Date:  1983-09       Impact factor: 11.105

6.  BIOPLAN: software for the biological evaluation of. Radiotherapy treatment plans.

Authors:  B Sanchez-Nieto; A E Nahum
Journal:  Med Dosim       Date:  2000       Impact factor: 1.482

7.  Effects of ongoing smoking on the development of radiation-induced pneumonitis in breast cancer and oesophagus cancer patients.

Authors:  S Johansson; L Bjermer; L Franzen; R Henriksson
Journal:  Radiother Oncol       Date:  1998-10       Impact factor: 6.280

8.  A model for calculating tumour control probability in radiotherapy including the effects of inhomogeneous distributions of dose and clonogenic cell density.

Authors:  S Webb; A E Nahum
Journal:  Phys Med Biol       Date:  1993-06       Impact factor: 3.609

9.  Radiation-induced increase in hyaluronan and fibronectin in bronchoalveolar lavage fluid from breast cancer patients is suppressed by smoking.

Authors:  L Bjermer; R Hällgren; K Nilsson; L Franzen; T Sandström; B Särnstrand; R Henriksson
Journal:  Eur Respir J       Date:  1992-07       Impact factor: 16.671

10.  Effects of tobacco-smoke on radiation-induced pneumonitis in rats.

Authors:  K Nilsson; R Henriksson; Y Q Cai; S Hellström; S Hörnqvist Bylunds; L Bjermer
Journal:  Int J Radiat Biol       Date:  1992-12       Impact factor: 2.694

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  6 in total

1.  Variable selection in Logistic regression model with genetic algorithm.

Authors:  Zhongheng Zhang; Victor Trevino; Sayed Shahabuddin Hoseini; Smaranda Belciug; Arumugam Manivanna Boopathi; Ping Zhang; Florin Gorunescu; Velappan Subha; Songshi Dai
Journal:  Ann Transl Med       Date:  2018-02

2.  Small-field dosimetry with detector-specific output correction factor for single-isocenter stereotactic radiotherapy of single and multiple brain metastases.

Authors:  Tomohiro Ono; Kohei Kawata; Mitsuhiro Nakamura; Megumi Uto; Takashi Mizowaki
Journal:  Radiol Phys Technol       Date:  2022-10-22

3.  MiningABs: mining associated biomarkers across multi-connected gene expression datasets.

Authors:  Chun-Pei Cheng; Christopher DeBoever; Kelly A Frazer; Yu-Cheng Liu; Vincent S Tseng
Journal:  BMC Bioinformatics       Date:  2014-06-08       Impact factor: 3.169

4.  Genetic algorithm with logistic regression for prediction of progression to Alzheimer's disease.

Authors:  Piers Johnson; Luke Vandewater; William Wilson; Paul Maruff; Greg Savage; Petra Graham; Lance S Macaulay; Kathryn A Ellis; Cassandra Szoeke; Ralph N Martins; Christopher C Rowe; Colin L Masters; David Ames; Ping Zhang
Journal:  BMC Bioinformatics       Date:  2014-12-08       Impact factor: 3.169

5.  An adaptive genetic algorithm for selection of blood-based biomarkers for prediction of Alzheimer's disease progression.

Authors:  Luke Vandewater; Vladimir Brusic; William Wilson; Lance Macaulay; Ping Zhang
Journal:  BMC Bioinformatics       Date:  2015-12-09       Impact factor: 3.169

6.  Which is a more accurate predictor in colorectal survival analysis? Nine data mining algorithms vs. the TNM staging system.

Authors:  Peng Gao; Xin Zhou; Zhen-ning Wang; Yong-xi Song; Lin-lin Tong; Ying-ying Xu; Zhen-yu Yue; Hui-mian Xu
Journal:  PLoS One       Date:  2012-07-25       Impact factor: 3.240

  6 in total

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