Literature DB >> 19173563

NMR measure of translational diffusion and fractal dimension. Application to molecular mass measurement.

Sophie Augé1, Pierre-Olivier Schmit, Christopher A Crutchfield, Mohammad T Islam, Douglas J Harris, Emmanuelle Durand, Martin Clemancey, Anne-Agathe Quoineaud, Jean-Marc Lancelin, Yann Prigent, Francis Taulelle, Marc-André Delsuc.   

Abstract

Experimental NMR diffusion measure on polymers and on globular proteins are presented. These results, complemented with results found in the literature, enable a general description of effective fractal dimension for objects such as small organic molecules, sugars, polymers, DNA, and proteins. Results are compared to computational simulations as well as to theoretical values. A global picture of the diffusion phenomenon emerges from this description. A power law relating molecular mass with diffusion coefficients is described and found to be valid over 4 orders of magnitude. From this law, the fractal dimension of the molecular family can be measured, with experimental values ranging from 1.41 to 2.56 in full agreement with theoretical approaches. Finally, a method for evaluating the molecular mass of unknown solutes is described and implemented as a Web page.

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Year:  2009        PMID: 19173563     DOI: 10.1021/jp8094424

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  10 in total

1.  Methods to determine slow diffusion coefficients of biomolecules: applications to Engrailed 2, a partially disordered protein.

Authors:  Rafal Augustyniak; Fabien Ferrage; Raphaël Paquin; Olivier Lequin; Geoffrey Bodenhausen
Journal:  J Biomol NMR       Date:  2011-05-21       Impact factor: 2.835

2.  Insight into human insulin aggregation revisited using NMR derived translational diffusion parameters.

Authors:  Jerzy Sitkowski; Wojciech Bocian; Elżbieta Bednarek; Mateusz Urbańczyk; Wiktor Koźmiński; Piotr Borowicz; Grażyna Płucienniczak; Natalia Łukasiewicz; Iwona Sokołowska; Lech Kozerski
Journal:  J Biomol NMR       Date:  2018-06-12       Impact factor: 2.835

3.  Pulse-field gradient nuclear magnetic resonance of protein translational diffusion from native to non-native states.

Authors:  Richard D Whitehead; Carolyn M Teschke; Andrei T Alexandrescu
Journal:  Protein Sci       Date:  2022-05       Impact factor: 6.993

4.  Accurate molecular weight determination of small molecules via DOSY-NMR by using external calibration curves with normalized diffusion coefficients.

Authors:  Roman Neufeld; Dietmar Stalke
Journal:  Chem Sci       Date:  2015-03-19       Impact factor: 9.825

5.  Quantitative Interpretation of Protein Diffusion Coefficients in Mixed Protiated-Deuteriated Aqueous Solvents.

Authors:  Bridget Tang; Katie Chong; Walter Massefski; Robert Evans
Journal:  J Phys Chem B       Date:  2022-08-02       Impact factor: 3.466

6.  Reducing Passive Drug Diffusion from Electrophoretic Drug Delivery Devices through Co-Ion Engineering.

Authors:  Shao-Tuan Chen; Megan N Renny; Liliana C Tomé; Jorge L Olmedo-Martínez; Esther Udabe; Elise P W Jenkins; David Mecerreyes; George G Malliaras; Robert R McLeod; Christopher M Proctor
Journal:  Adv Sci (Weinh)       Date:  2021-04-10       Impact factor: 16.806

7.  The Power of Heterogeneity: Parameter Relationships from Distributions.

Authors:  Magnus Röding; Siobhan J Bradley; Nathan H Williamson; Melissa R Dewi; Thomas Nann; Magnus Nydén
Journal:  PLoS One       Date:  2016-05-16       Impact factor: 3.240

8.  Formation of persistent organic diradicals from N,N'-diphenyl-3,7-diazacyclooctanes.

Authors:  Sara Norrehed; Christoffer Karlsson; Mark E Light; Anders Thapper; Ping Huang; Adolf Gogoll
Journal:  Monatsh Chem       Date:  2018-10-29       Impact factor: 1.451

9.  On the Mechanism of Genipin Binding to Primary Amines in Lactose-Modified Chitosan at Neutral pH.

Authors:  Chiara Pizzolitto; Michela Cok; Fioretta Asaro; Francesca Scognamiglio; Eleonora Marsich; Francesco Lopez; Ivan Donati; Pasquale Sacco
Journal:  Int J Mol Sci       Date:  2020-09-17       Impact factor: 5.923

10.  Self-Diffusive Properties of the Intrinsically Disordered Protein Histatin 5 and the Impact of Crowding Thereon: A Combined Neutron Spectroscopy and Molecular Dynamics Simulation Study.

Authors:  Eric Fagerberg; Samuel Lenton; Tommy Nylander; Tilo Seydel; Marie Skepö
Journal:  J Phys Chem B       Date:  2022-01-19       Impact factor: 2.991

  10 in total

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