Literature DB >> 19167517

Altering the chromatin landscape for nucleotide excision repair.

Ronita Nag1, Michael J Smerdon.   

Abstract

DNA acts as a 'workbench' for various nuclear processes that occur inside living cells. In eukaryotic cells, DNA is highly compacted in a structural hierarchy with histones and other proteins into chromatin. This compaction affects DNA structure and coordinates the accessibility to site-specific nuclear factors during DNA processing events. DNA repair is no exception to this general rule and several reviews have appeared recently that discuss this topic in detail [1-3]. Here, we focus on recent findings correlating changes in DNA repair with subtle variations in the chromatin landscape.

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Year:  2009        PMID： 19167517     DOI： 10.1016/j.mrrev.2009.01.002

Source DB:  PubMed          Journal:  Mutat Res        ISSN： 0027-5107            Impact factor:   2.433


  19 in total

Review 1.  DNA damage response.

Authors:  Giuseppina Giglia-Mari; Angelika Zotter; Wim Vermeulen
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-01-01       Impact factor: 10.005

Review 2.  Determinants and dynamics of genome accessibility.

Authors:  Oliver Bell; Vijay K Tiwari; Nicolas H Thomä; Dirk Schübeler
Journal:  Nat Rev Genet       Date:  2011-07-12       Impact factor: 53.242

3.  DeFCoM: analysis and modeling of transcription factor binding sites using a motif-centric genomic footprinter.

Authors:  Bryan Quach; Terrence S Furey
Journal:  Bioinformatics       Date:  2017-04-01       Impact factor: 6.937

4.  Drosophila p53 is required to increase the levels of the dKDM4B demethylase after UV-induced DNA damage to demethylate histone H3 lysine 9.

Authors:  Zoraya Palomera-Sanchez; Alyeri Bucio-Mendez; Viviana Valadez-Graham; Enrique Reynaud; Mario Zurita
Journal:  J Biol Chem       Date:  2010-07-30       Impact factor: 5.157

5.  Histone Sprocket Arginine Residues Are Important for Gene Expression, DNA Repair, and Cell Viability in Saccharomyces cerevisiae.

Authors:  Amelia J Hodges; Isaura J Gallegos; Marian F Laughery; Rithy Meas; Linh Tran; John J Wyrick
Journal:  Genetics       Date:  2015-05-12       Impact factor: 4.562

6.  NuA4 acetyltransferase is required for efficient nucleotide excision repair in yeast.

Authors:  Amelia J Hodges; Dalton A Plummer; John J Wyrick
Journal:  DNA Repair (Amst)       Date:  2018-11-14

7.  Inhibition of Excision of Oxidatively Generated Hydantoin DNA Lesions by NEIL1 by the Competitive Binding of the Nucleotide Excision Repair Factor XPC-RAD23B.

Authors:  Marina Kolbanovskiy; Yoonjung Shim; Jung-Hyun Min; Nicholas E Geacintov; Vladimir Shafirovich
Journal:  Biochemistry       Date:  2020-04-21       Impact factor: 3.162

8.  Single-Molecule Imaging Reveals that Rad4 Employs a Dynamic DNA Damage Recognition Process.

Authors:  Muwen Kong; Lili Liu; Xuejing Chen; Katherine I Driscoll; Peng Mao; Stefanie Böhm; Neil M Kad; Simon C Watkins; Kara A Bernstein; John J Wyrick; Jung-Hyun Min; Bennett Van Houten
Journal:  Mol Cell       Date:  2016-10-06       Impact factor: 17.970

Review 9.  Genomic approaches to DNA repair and mutagenesis.

Authors:  John J Wyrick; Steven A Roberts
Journal:  DNA Repair (Amst)       Date:  2015-09-15

10.  Single-nucleotide resolution dynamic repair maps of UV damage in Saccharomyces cerevisiae genome.

Authors:  Wentao Li; Ogun Adebali; Yanyan Yang; Christopher P Selby; Aziz Sancar
Journal:  Proc Natl Acad Sci U S A       Date:  2018-03-26       Impact factor: 11.205
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