Literature DB >> 19163067

Leveraging genetic algorithm and neural network in automated protein crystal recognition.

Ming Jack Po1, Andrew F Laine.   

Abstract

We propose a classification framework combined with a multi-scale image processing method for recognizing protein crystals in high-throughput images. The main three points of the processing method are the multiple population genetic algorithm for region of interest detection, multi-scale Laplacian pyramid filters and histogram analysis techniques to find an effective feature vector. Using human (expert crystallographers) classified images as ground truth, the current experimental results gave 88% true positive and 99% true negative rates, resulting in an average true performance of approximately 93.5% validated on an image database which contained over 79,000 images.

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Year:  2008        PMID: 19163067     DOI: 10.1109/IEMBS.2008.4649564

Source DB:  PubMed          Journal:  Conf Proc IEEE Eng Med Biol Soc        ISSN: 1557-170X


  7 in total

1.  Protein Crystallization Segmentation and Classification Using Subordinate Color Channel in Fluorescence Microscopy Images.

Authors:  Truong X Tran; Marc L Pusey; Ramazan S Aygun
Journal:  J Fluoresc       Date:  2020-04-20       Impact factor: 2.217

2.  Evaluation of Semi-supervised Learning for Classification of Protein Crystallization Imagery.

Authors:  Madhav Sigdel; İmren Dinç; Semih Dinç; Madhu S Sigdel; Marc L Pusey; Ramazan S Aygün
Journal:  Proc IEEE Southeastcon       Date:  2014-03

3.  Protein crystallization analysis on the World Community Grid.

Authors:  Christian A Cumbaa; Igor Jurisica
Journal:  J Struct Funct Genomics       Date:  2010-01-14

4.  CrystPro: Spatiotemporal Analysis of Protein Crystallization Images.

Authors:  Madhav Sigdel; Marc L Pusey; Ramazan S Aygun
Journal:  Cryst Growth Des       Date:  2015-09-16       Impact factor: 4.076

5.  Real-Time Protein Crystallization Image Acquisition and Classification System.

Authors:  Madhav Sigdel; Marc L Pusey; Ramazan S Aygun
Journal:  Cryst Growth Des       Date:  2013-07-03       Impact factor: 4.076

6.  Feature analysis for classification of trace fluorescent labeled protein crystallization images.

Authors:  Madhav Sigdel; Imren Dinc; Madhu S Sigdel; Semih Dinc; Marc L Pusey; Ramazan S Aygun
Journal:  BioData Min       Date:  2017-04-27       Impact factor: 2.522

7.  Classification of crystallization outcomes using deep convolutional neural networks.

Authors:  Andrew E Bruno; Patrick Charbonneau; Janet Newman; Edward H Snell; David R So; Vincent Vanhoucke; Christopher J Watkins; Shawn Williams; Julie Wilson
Journal:  PLoS One       Date:  2018-06-20       Impact factor: 3.240

  7 in total

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