Literature DB >> 19162481

Genomic islands are dynamic, ancient integrative elements in bacterial evolution.

E Fidelma Boyd1, Salvador Almagro-Moreno, Michelle A Parent.   

Abstract

Acquisition of genomic islands plays a central part in bacterial evolution as a mechanism of diversification and adaptation. Genomic islands are non-self-mobilizing integrative and excisive elements that encode diverse functional characteristics but all contain a recombination module comprised of an integrase, associated attachment sites and, in some cases, a recombination directionality factor. Here, we discuss how a group of related genomic islands are evolutionarily ancient elements unrelated to plasmids, phages, integrons and integrative conjugative elements. In addition, we explore the diversity of genomic islands and their insertion sites among Gram-negative bacteria and discuss why they integrate at a limited number of tRNA genes.

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Year:  2009        PMID: 19162481     DOI: 10.1016/j.tim.2008.11.003

Source DB:  PubMed          Journal:  Trends Microbiol        ISSN: 0966-842X            Impact factor:   17.079


  62 in total

Review 1.  Genome dynamics and its impact on evolution of Escherichia coli.

Authors:  Ulrich Dobrindt; M Geddam Chowdary; G Krumbholz; J Hacker
Journal:  Med Microbiol Immunol       Date:  2010-05-06       Impact factor: 3.402

Review 2.  Detecting genomic islands using bioinformatics approaches.

Authors:  Morgan G I Langille; William W L Hsiao; Fiona S L Brinkman
Journal:  Nat Rev Microbiol       Date:  2010-05       Impact factor: 60.633

3.  Mobilizable genomic islands: going mobile with oriT mimicry.

Authors:  Matthew K Waldor
Journal:  Mol Microbiol       Date:  2010-11       Impact factor: 3.501

4.  Transcription termination controls prophage maintenance in Escherichia coli genomes.

Authors:  Rachid Menouni; Stéphanie Champ; Leon Espinosa; Marc Boudvillain; Mireille Ansaldi
Journal:  Proc Natl Acad Sci U S A       Date:  2013-08-12       Impact factor: 11.205

5.  Redefinition and Unification of the SXT/R391 Family of Integrative and Conjugative Elements.

Authors:  Audrey Bioteau; Romain Durand; Vincent Burrus
Journal:  Appl Environ Microbiol       Date:  2018-06-18       Impact factor: 4.792

6.  Structures of the arm-type binding domains of HPI and HAI7 integrases.

Authors:  Aleksandra Szwagierczak; Uladzimir Antonenka; Grzegorz M Popowicz; Tomasz Sitar; Tad A Holak; Alexander Rakin
Journal:  J Biol Chem       Date:  2009-09-08       Impact factor: 5.157

7.  ICEEc2, a new integrative and conjugative element belonging to the pKLC102/PAGI-2 family, identified in Escherichia coli strain BEN374.

Authors:  David Roche; Maud Fléchard; Nathalie Lallier; Maryline Répérant; Annie Brée; Géraldine Pascal; Catherine Schouler; Pierre Germon
Journal:  J Bacteriol       Date:  2010-07-30       Impact factor: 3.490

8.  Comparative genomic analysis reveals evidence of two novel Vibrio species closely related to V. cholerae.

Authors:  Bradd J Haley; Christopher J Grim; Nur A Hasan; Seon-Young Choi; Jongsik Chun; Thomas S Brettin; David C Bruce; Jean F Challacombe; J Chris Detter; Cliff S Han; Anwar Huq; Rita R Colwell
Journal:  BMC Microbiol       Date:  2010-05-27       Impact factor: 3.605

9.  Tight regulation of the intS gene of the KplE1 prophage: a new paradigm for integrase gene regulation.

Authors:  Gaël Panis; Yohann Duverger; Elise Courvoisier-Dezord; Stéphanie Champ; Emmanuel Talla; Mireille Ansaldi
Journal:  PLoS Genet       Date:  2010-10-07       Impact factor: 5.917

10.  Strain-specific genes of Helicobacter pylori: genome evolution driven by a novel type IV secretion system and genomic island transfer.

Authors:  Wolfgang Fischer; Lukas Windhager; Stefanie Rohrer; Matthias Zeiller; Arno Karnholz; Reinhard Hoffmann; Ralf Zimmer; Rainer Haas
Journal:  Nucleic Acids Res       Date:  2010-05-16       Impact factor: 16.971

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