Literature DB >> 19159195

Helix-coil transition of DNA monitored by pressure perturbation calorimetry.

Gamal Rayan1, Alekos D Tsamaloukas, Robert B Macgregor, Heiko Heerklotz.   

Abstract

We report the first use of pressure perturbation calorimetry (PPC) to characterize the heat-induced helix-coil transition of DNA polymers. The alternating copolymer poly[d(A-T)] was studied in aqueous solutions containing 5.2 and 18.2 mM Na+; it exhibited helix-coil transition temperatures of 33.6 and 44.7 degrees C, respectively. The transition is accompanied by a negative molar volume change, DeltaV) -2.6 and -2.1 mL/mol (base pair), respectively, and an increase in the coefficient of thermal expansion, Deltaalpha=+5x10(-4) K(-1) (at both ionic strengths). These values are consistent with a greater hydration of the coil form. The larger water-accessible surface area of the coil causes more water molecules to assume a bound, more densely packed structure that then gradually decreases with increasing temperature, leading to a larger value of R. The magnitude of the volume changes detected by PPC were larger than those deduced from high-pressure UV spectroscopy, shedding light on the effect of pressure on DeltaV. The shape of the PPC peak was nearly identical to the shape of the DSC peak, providing direct evidence for the correlation between the molar volume change and enthalpy change for the helix to coil transition of DNA.

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Year:  2009        PMID: 19159195     DOI: 10.1021/jp808253t

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  4 in total

1.  Hidden intermediates in Mango III RNA aptamer folding revealed by pressure perturbation.

Authors:  Balasubramanian Harish; Jinqiu Wang; Eric J Hayden; Bastian Grabe; Wolf Hiller; Roland Winter; Catherine A Royer
Journal:  Biophys J       Date:  2021-12-28       Impact factor: 4.033

2.  Characterization of DNA with an 8-oxoguanine modification.

Authors:  Sreelekha K Singh; Marta W Szulik; Manjori Ganguly; Irine Khutsishvili; Michael P Stone; Luis A Marky; Barry Gold
Journal:  Nucleic Acids Res       Date:  2011-05-13       Impact factor: 16.971

3.  Analysis of Mesoscopic Structured 2-Propanol/Water Mixtures Using Pressure Perturbation Calorimetry and Molecular Dynamic Simulation.

Authors:  Jordan W Bye; Colin L Freeman; John D Howard; Gregor Herz; James McGregor; Robert J Falconer
Journal:  J Solution Chem       Date:  2016-12-17       Impact factor: 1.677

4.  Looking for Waldo: a potential thermodynamic signature to DNA damage.

Authors:  Barry Gold; Michael P Stone; Luis A Marky
Journal:  Acc Chem Res       Date:  2014-04-04       Impact factor: 22.384

  4 in total

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