Literature DB >> 19159105

Biosensor detection systems: engineering stable, high-affinity bioreceptors by yeast surface display.

Sarah A Richman1, David M Kranz, Jennifer D Stone.   

Abstract

Over the past two decades, the field of biosensors has been developing fast, portable, and convenient detection tools for various molecules of interest, both biological and environmental. Although much attention is paid to the transduction portion of the sensor, the actual bioreceptor that binds the ligand is equally critical. Tight, specific binding by the bioreceptor is required to detect low levels of the relevant ligand, and the bioreceptor must be stable enough to survive immobilization, storage, and in ideal cases, regeneration on the biosensing device. Often, naturally-occurring bioreceptors or antibodies that are specific for a ligand either express affinities that may be too low to detect useful levels, or the proteins are too unstable to be used and reused as a biosensor. Further engineering of these receptors can improve their utility. Here, we describe in detail the use of yeast surface display techniques to carry out directed evolution of bioreceptors to increase both the stability of the molecules and their affinity for the ligands. This powerful technique has enabled the production of stabilized, single-chain antibodies, T cell receptors, and other binding molecules that exhibit affinity increases for their ligands of up to 1 million-fold and expression of stable molecules in E. coli.

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Year:  2009        PMID: 19159105      PMCID: PMC3096842          DOI: 10.1007/978-1-60327-569-9_19

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  47 in total

1.  Optimal screening of surface-displayed polypeptide libraries.

Authors:  E T Boder; K D Wittrup
Journal:  Biotechnol Prog       Date:  1998 Jan-Feb

2.  Quantitative analysis of the effect of the mutation frequency on the affinity maturation of single chain Fv antibodies.

Authors:  P S Daugherty; G Chen; B L Iverson; G Georgiou
Journal:  Proc Natl Acad Sci U S A       Date:  2000-02-29       Impact factor: 11.205

3.  Directed evolution of a stable scaffold for T-cell receptor engineering.

Authors:  E V Shusta; P D Holler; M C Kieke; D M Kranz; K D Wittrup
Journal:  Nat Biotechnol       Date:  2000-07       Impact factor: 54.908

4.  Directed evolution of antibody fragments with monovalent femtomolar antigen-binding affinity.

Authors:  E T Boder; K S Midelfort; K D Wittrup
Journal:  Proc Natl Acad Sci U S A       Date:  2000-09-26       Impact factor: 11.205

5.  Molecular evolution of antibody cross-reactivity for two subtypes of type A botulinum neurotoxin.

Authors:  Consuelo Garcia-Rodriguez; Raphael Levy; Joseph W Arndt; Charles M Forsyth; Ali Razai; Jianlong Lou; Isin Geren; Raymond C Stevens; James D Marks
Journal:  Nat Biotechnol       Date:  2006-12-17       Impact factor: 54.908

6.  Isolating and engineering human antibodies using yeast surface display.

Authors:  Ginger Chao; Wai L Lau; Benjamin J Hackel; Stephen L Sazinsky; Shaun M Lippow; K Dane Wittrup
Journal:  Nat Protoc       Date:  2006       Impact factor: 13.491

Review 7.  Display, engineering, and applications of antigen-specific T cell receptors.

Authors:  Sarah A Richman; David M Kranz
Journal:  Biomol Eng       Date:  2007-03-12

8.  Neutralization of staphylococcal enterotoxin B by soluble, high-affinity receptor antagonists.

Authors:  Rebecca A Buonpane; Hywyn R O Churchill; Beenu Moza; Eric J Sundberg; Marnie L Peterson; Patrick M Schlievert; David M Kranz
Journal:  Nat Med       Date:  2007-05-21       Impact factor: 53.440

9.  High-affinity single-domain binding proteins with a binary-code interface.

Authors:  Akiko Koide; Ryan N Gilbreth; Kaori Esaki; Valentina Tereshko; Shohei Koide
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-09       Impact factor: 11.205

10.  Evolution of an interloop disulfide bond in high-affinity antibody mimics based on fibronectin type III domain and selected by yeast surface display: molecular convergence with single-domain camelid and shark antibodies.

Authors:  Dasa Lipovsek; Shaun M Lippow; Benjamin J Hackel; Melissa W Gregson; Paul Cheng; Atul Kapila; K Dane Wittrup
Journal:  J Mol Biol       Date:  2007-02-22       Impact factor: 5.469

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  9 in total

1.  T Cell Receptor Engineering and Analysis Using the Yeast Display Platform.

Authors:  Sheena N Smith; Daniel T Harris; David M Kranz
Journal:  Methods Mol Biol       Date:  2015

Review 2.  Biosensors for whole-cell bacterial detection.

Authors:  Asif Ahmed; Jo V Rushworth; Natalie A Hirst; Paul A Millner
Journal:  Clin Microbiol Rev       Date:  2014-07       Impact factor: 26.132

3.  Plasticity in the contribution of T cell receptor variable region residues to binding of peptide-HLA-A2 complexes.

Authors:  Sheena N Smith; Daniel Sommermeyer; Kurt H Piepenbrink; Sydney J Blevins; Helga Bernhard; Wolfgang Uckert; Brian M Baker; David M Kranz
Journal:  J Mol Biol       Date:  2013-08-14       Impact factor: 5.469

4.  Engineering Proteins by Combining Deep Mutational Scanning and Yeast Display.

Authors:  Preeti Sharma; Erik Procko; David M Kranz
Journal:  Methods Mol Biol       Date:  2022

5.  Directed evolution of a fluorogen-activating single chain antibody for function and enhanced brightness in the cytoplasm.

Authors:  Bradley P Yates; Michelle A Peck; Peter B Berget
Journal:  Mol Biotechnol       Date:  2013-07       Impact factor: 2.695

6.  Studies of the TLR4-associated protein MD-2 using yeast-display and mutational analyses.

Authors:  Daiva M Mattis; Adam S Chervin; Diana R Ranoa; Stacy L Kelley; Richard I Tapping; David M Kranz
Journal:  Mol Immunol       Date:  2015-08-28       Impact factor: 4.407

7.  Spatiotemporal control of phosphatidic acid signaling with optogenetic, engineered phospholipase Ds.

Authors:  Reika Tei; Jeremy M Baskin
Journal:  J Cell Biol       Date:  2020-03-02       Impact factor: 10.539

8.  CD4 Inhibits Helper T Cell Activation at Lower Affinity Threshold for Full-Length T Cell Receptors Than Single Chain Signaling Constructs.

Authors:  Deborah K Johnson; Wyatt Magoffin; Sheldon J Myers; Jordan G Finnell; John C Hancock; Taylor S Orton; Stephen P Persaud; Kenneth A Christensen; K Scott Weber
Journal:  Front Immunol       Date:  2021-01-19       Impact factor: 7.561

9.  A Multiplex Assay for Detection of Staphylococcal and Streptococcal Exotoxins.

Authors:  Preeti Sharma; Ningyan Wang; Adam S Chervin; Cheryl L Quinn; Jennifer D Stone; David M Kranz
Journal:  PLoS One       Date:  2015-08-25       Impact factor: 3.240

  9 in total

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