Literature DB >> 19158498

Gene fusions and RNA trans-splicing in normal and neoplastic human cells.

Hui Li1, Jinglan Wang, Xianyong Ma, Jeffrey Sklar.   

Abstract

Chimeric gene products, most often resulting from chromosome translocations, have been considered unique features of cancer, or at least of cells at high risk for becoming cancerous. Chimeric JAZF1-JJAZ1 mRNA transcribed from DNA spanning the site of recombination in the (7;17)(p15;q21) chromosomal translocation found in half of endometrial stromal sarcomas and most cases of benign stromal nodules is one such example. The recent finding that chimeric JAZF1-JJAZ1 mRNA can also be detected in normal endometrial stromal cells suggests that chimeric gene products are not limited to cancer or pre-cancerous cells. The JAZF1-JJAZ1 mRNA and the protein encoded by it appear to be identical to that synthesized from the gene fusion in neoplastic cells. In cultured cells, the chimeric protein has anti-apoptotic properties and is pro-proliferative when unrearranged JJAZ1 alleles are silenced, as they are in endometrial stromal sarcomas but not in the stromal nodules. These observations are consistent with the conclusion that chromosomal rearrangements and gene fusions in neoplastic cells may represent mechanisms for the deregulated expression of chimeric gene products that are generated at specific stages in cell development and have physiologic functions in normal cells. Furthermore, it may be possible that other means for abnormal production of chimeric gene products, such as hyperactive transsplicing of RNA, may be another mechanism underlying the neoplastic properties of tumor cells.

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Year:  2009        PMID: 19158498     DOI: 10.4161/cc.8.2.7358

Source DB:  PubMed          Journal:  Cell Cycle        ISSN: 1551-4005            Impact factor:   4.534


  43 in total

1.  Homologous SV40 RNA trans-splicing: a new mechanism for diversification of viral sequences and phenotypes.

Authors:  Joachim Eul; Volker Patzel
Journal:  RNA Biol       Date:  2013-10-14       Impact factor: 4.652

Review 2.  Identifying fusion transcripts using next generation sequencing.

Authors:  Shailesh Kumar; Sundus Khalid Razzaq; Angie Duy Vo; Mamta Gautam; Hui Li
Journal:  Wiley Interdiscip Rev RNA       Date:  2016-08-02       Impact factor: 9.957

3.  Fusion transcriptome profiling provides insights into alveolar rhabdomyosarcoma.

Authors:  Zhongqiu Xie; Mihaela Babiceanu; Shailesh Kumar; Yuemeng Jia; Fujun Qin; Frederic G Barr; Hui Li
Journal:  Proc Natl Acad Sci U S A       Date:  2016-10-31       Impact factor: 11.205

4.  Long-range transcriptome sequencing reveals cancer cell growth regulatory chimeric mRNA.

Authors:  Roberto Plebani; Gavin R Oliver; Marco Trerotola; Emanuela Guerra; Pamela Cantanelli; Luana Apicella; Andrew Emerson; Alessandro Albiero; Paul D Harkin; Richard D Kennedy; Saverio Alberti
Journal:  Neoplasia       Date:  2012-11       Impact factor: 5.715

5.  State of art fusion-finder algorithms are suitable to detect transcription-induced chimeras in normal tissues?

Authors:  Matteo Carrara; Marco Beccuti; Federica Cavallo; Susanna Donatelli; Fulvio Lazzarato; Francesca Cordero; Raffaele A Calogero
Journal:  BMC Bioinformatics       Date:  2013-04-22       Impact factor: 3.169

6.  Integrative transcriptome sequencing reveals extensive alternative trans-splicing and cis-backsplicing in human cells.

Authors:  Trees-Juen Chuang; Yen-Ju Chen; Chia-Ying Chen; Te-Lun Mai; Yi-Da Wang; Chung-Shu Yeh; Min-Yu Yang; Yu-Ting Hsiao; Tien-Hsien Chang; Tzu-Chien Kuo; Hsin-Hua Cho; Chia-Ning Shen; Hung-Chih Kuo; Mei-Yeh Lu; Yi-Hua Chen; Shan-Chi Hsieh; Tai-Wei Chiang
Journal:  Nucleic Acids Res       Date:  2018-04-20       Impact factor: 16.971

7.  ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data.

Authors:  Milana Frenkel-Morgenstern; Alessandro Gorohovski; Vincent Lacroix; Mark Rogers; Kristina Ibanez; Cesar Boullosa; Eduardo Andres Leon; Asa Ben-Hur; Alfonso Valencia
Journal:  Nucleic Acids Res       Date:  2012-11-09       Impact factor: 16.971

8.  Identification and characterization of a novel non-coding RNA involved in sperm maturation.

Authors:  Min-Jie Ni; Zhi-Hong Hu; Qiang Liu; Mo-Fang Liu; Min-hua Lu; Jin-Song Zhang; Li Zhang; Yong-Lian Zhang
Journal:  PLoS One       Date:  2011-10-12       Impact factor: 3.240

9.  Expression profile of ectopic olfactory receptors determined by deep sequencing.

Authors:  Caroline Flegel; Stavros Manteniotis; Sandra Osthold; Hanns Hatt; Günter Gisselmann
Journal:  PLoS One       Date:  2013-02-06       Impact factor: 3.240

10.  Chimeras taking shape: potential functions of proteins encoded by chimeric RNA transcripts.

Authors:  Milana Frenkel-Morgenstern; Vincent Lacroix; Iakes Ezkurdia; Yishai Levin; Alexandra Gabashvili; Jaime Prilusky; Angela Del Pozo; Michael Tress; Rory Johnson; Roderic Guigo; Alfonso Valencia
Journal:  Genome Res       Date:  2012-05-15       Impact factor: 9.043

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