Literature DB >> 19150991

Glaucoma-associated WDR36 variants encode functional defects in a yeast model system.

Tim K Footz1, Jill L Johnson, Stéphane Dubois, Nicolas Boivin, Vincent Raymond, Michael A Walter.   

Abstract

Primary open-angle glaucoma (POAG) is a leading cause of blindness worldwide. POAG is associated with a characteristic progression of changes to ocular morphology and degeneration at the optic nerve head with the loss of visual fields. Physical mapping efforts identified genomic loci in which to search for causative POAG gene mutations. WDR36, at locus GLC1G, was initially identified as a gene with a low frequency of non-synonymous sequence variations that were exclusive to adult-onset POAG patients. It has since been shown that rare WDR36 sequence variants are also present in the normal population at similarly low frequencies. The lack of a consistent genotype:phenotype correlation prompted us to investigate the functional consequences of WDR36 sequence variations. WDR36 is involved in rRNA processing, a critical step in ribosome biogenesis, and is very similar to yeast Utp21p which is a member of the small subunit (SSU) processome complex responsible for maturation of 18S rRNA. We, therefore, developed a yeast model system to test the functional and phenotypic consequences of POAG-associated sequence variants introduced into UTP21. Alone, the POAG variants did not produce any significant defects in cell viability or rRNA processing. However, when combined with disruption of STI1 (which synthetically interacts with UTP21), 5 of the 11 tested variants had increased or decreased cell viability which corresponded to reduced or elevated levels of pre-rRNA, respectively. These results demonstrate that, in the correct genetic background, WDR36 sequence variants can lead to an altered cellular phenotype, supporting the theory that WDR36 participates in polygenic forms of glaucoma.

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Year:  2009        PMID: 19150991     DOI: 10.1093/hmg/ddp027

Source DB:  PubMed          Journal:  Hum Mol Genet        ISSN: 0964-6906            Impact factor:   6.150


  24 in total

1.  WDR36 and P53 gene variants and susceptibility to primary open-angle glaucoma: analysis of gene-gene interactions.

Authors:  Cristina Blanco-Marchite; Francisco Sánchez-Sánchez; María-Pilar López-Garrido; Mercedes Iñigez-de-Onzoño; Francisco López-Martínez; Enrique López-Sánchez; Lydia Alvarez; Pedro-Pablo Rodríguez-Calvo; Carmen Méndez-Hernández; Luis Fernández-Vega; Julián García-Sánchez; Miguel Coca-Prados; Julián García-Feijoo; Julio Escribano
Journal:  Invest Ophthalmol Vis Sci       Date:  2011-10-31       Impact factor: 4.799

Review 2.  Primary open-angle glaucoma genes.

Authors:  J H Fingert
Journal:  Eye (Lond)       Date:  2011-05       Impact factor: 3.775

Review 3.  Genome-wide association studies: applications and insights gained in Ophthalmology.

Authors:  A Chandra; D Mitry; A Wright; H Campbell; D G Charteris
Journal:  Eye (Lond)       Date:  2014-06-27       Impact factor: 3.775

4.  Common variants near ABCA1 and in PMM2 are associated with primary open-angle glaucoma.

Authors:  Yuhong Chen; Ying Lin; Eranga N Vithana; Liyun Jia; Xianbo Zuo; Tien Yin Wong; Li Jia Chen; Xianjun Zhu; Pancy O S Tam; Bo Gong; Shaohong Qian; Zheng Li; Xiaoqi Liu; Baskaran Mani; Qian Luo; Celeste Guzman; Christopher K S Leung; Xiaobo Li; Wenjun Cao; Quanyao Yang; Clement C Y Tham; Yilian Cheng; Xuejun Zhang; Ningli Wang; Tin Aung; Chiea Chuen Khor; Chi Pui Pang; Xinghuai Sun; Zhenglin Yang
Journal:  Nat Genet       Date:  2014-08-31       Impact factor: 38.330

5.  Copy number variations and primary open-angle glaucoma.

Authors:  Lea K Davis; Kacie J Meyer; Emily I Schindler; John S Beck; Danielle S Rudd; A Jason Grundstad; Todd E Scheetz; Terry A Braun; John H Fingert; Wallace L M Alward; Young H Kwon; James C Folk; Stephen R Russell; Thomas H Wassink; Val C Sheffield; Edwin M Stone
Journal:  Invest Ophthalmol Vis Sci       Date:  2011-09-09       Impact factor: 4.799

Review 6.  Genetics of primary open angle glaucoma.

Authors:  Mitsuko Takamoto; Makoto Araie
Journal:  Jpn J Ophthalmol       Date:  2013-11-21       Impact factor: 2.447

Review 7.  Molecular genetics in glaucoma.

Authors:  Yutao Liu; R Rand Allingham
Journal:  Exp Eye Res       Date:  2011-08-18       Impact factor: 3.467

8.  Mutant WDR36 directly affects axon growth of retinal ganglion cells leading to progressive retinal degeneration in mice.

Authors:  Zai-Long Chi; Fumie Yasumoto; Yuri Sergeev; Masayoshi Minami; Minoru Obazawa; Itaru Kimura; Yuichiro Takada; Takeshi Iwata
Journal:  Hum Mol Genet       Date:  2010-07-14       Impact factor: 6.150

Review 9.  Molecular complexity of primary open angle glaucoma: current concepts.

Authors:  Kunal Ray; Suddhasil Mookherjee
Journal:  J Genet       Date:  2009-12       Impact factor: 1.166

Review 10.  Human diseases of the SSU processome.

Authors:  Samuel B Sondalle; Susan J Baserga
Journal:  Biochim Biophys Acta       Date:  2013-11-12
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