Literature DB >> 19150588

Early prediction of lung cancer based on the combination of trace element analysis in urine and an Adaboost algorithm.

Chao Tan1, Hui Chen, Chengyun Xia.   

Abstract

Early detection of cancer is the key to effective treatment and long-term survival. Lung cancer is one of the most frequently occurring cancers and its early detection is particularly of interest. This work investigates the feasibility of a combination of Adaboost (ensemble from machining learning) using decision stumps as weak classifier and trace element analysis for predicting early lung cancer. A dataset involving the determination of 9 trace elements of 122 urine samples is used for illustration. Kennard and Stone (KS) algorithm coupled with an alternate re-sampling was used to realize sample set partitioning. The whole dataset was split into equally sized training and test set, which were then reversed to yield a second operating case, we called them case A and case B, respectively. The prediction results based on the Adaboost were compared with those from Fisher discriminant analysis (FDA). On the test set, the final Adaboost classifiers achieved a sensitivity of 100% for both cases, a specificity of 93.8%, 95.7%, and an overall accuracy of 95.1%, 96.7%, for case A and case B, respectively. In either case, Adaboost always achieves better performance than FDA; also, it is less sensitive to the composition of the training set compared to FDA and easy to control over-fitting. It seems that Adaboost is superior to FDA in the present task, indicating that integrating Adaboost and trace element analysis of urine can serve as a useful tool for diagnosing early lung cancer in clinical practice.

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Year:  2008        PMID: 19150588     DOI: 10.1016/j.jpba.2008.12.010

Source DB:  PubMed          Journal:  J Pharm Biomed Anal        ISSN: 0731-7085            Impact factor:   3.935


  5 in total

1.  Applying the Temporal Abstraction Technique to the Prediction of Chronic Kidney Disease Progression.

Authors:  Li-Chen Cheng; Ya-Han Hu; Shr-Han Chiou
Journal:  J Med Syst       Date:  2017-04-11       Impact factor: 4.460

2.  Metabolomics specificity of tuberculosis plasma revealed by (1)H NMR spectroscopy.

Authors:  Aiping Zhou; Jinjing Ni; Zhihong Xu; Ying Wang; Haomin Zhang; Wenjuan Wu; Shuihua Lu; Petros C Karakousis; Yu-Feng Yao
Journal:  Tuberculosis (Edinb)       Date:  2015-02-14       Impact factor: 3.131

3.  Prediction of gastric cancer metastasis through urinary metabolomic investigation using GC/MS.

Authors:  Jun-Duo Hu; Hui-Qing Tang; Qiang Zhang; Jing Fan; Jing Hong; Jian-Zhong Gu; Jin-Lian Chen
Journal:  World J Gastroenterol       Date:  2011-02-14       Impact factor: 5.742

4.  Determination of urinary 5-hydroxyindoleacetic acid as a metabolomics in gastric cancer.

Authors:  Maral Mokhtari; Amin Rezaei; Ali Ghasemi
Journal:  J Gastrointest Cancer       Date:  2015-06

Review 5.  Metabolomic studies of human gastric cancer: review.

Authors:  Naresh Doni Jayavelu; Nadav S Bar
Journal:  World J Gastroenterol       Date:  2014-07-07       Impact factor: 5.742

  5 in total

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