Literature DB >> 19149776

Meta-analysis of immune epitope data for all Plasmodia: overview and applications for malarial immunobiology and vaccine-related issues.

K Vaughan1, M Blythe, J Greenbaum, Q Zhang, B Peters, D L Doolan, A Sette.   

Abstract

We present a comprehensive meta-analysis of more than 500 references, describing nearly 5000 unique B cell and T cell epitopes derived from the Plasmodium genus, and detailing thousands of immunological assays. This is the first inventory of epitope data related to malaria-specific immunology, plasmodial pathogenesis, and vaccine performance. The survey included host and pathogen species distribution of epitopes, the number of antibody vs. CD4(+) and CD8(+) T cell epitopes, the genomic distribution of recognized epitopes, variance among epitopes from different parasite strains, and the characterization of protective epitopes and of epitopes associated with parasite evasion of the host immune response. The results identify knowledge gaps and areas for further investigation. This information has relevance to issues, such as the identification of epitopes and antigens associated with protective immunity, the design and development of candidate malaria vaccines, and characterization of immune response to strain polymorphisms.

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Year:  2009        PMID: 19149776      PMCID: PMC3327129          DOI: 10.1111/j.1365-3024.2008.01077.x

Source DB:  PubMed          Journal:  Parasite Immunol        ISSN: 0141-9838            Impact factor:   2.280


  56 in total

1.  Induction of CD4(+) T cell-dependent CD8(+) type 1 responses in humans by a malaria DNA vaccine.

Authors:  R Wang; J Epstein; F M Baraceros; E J Gorak; Y Charoenvit; D J Carucci; R C Hedstrom; N Rahardjo; T Gay; P Hobart; R Stout; T R Jones; T L Richie; S E Parker; D L Doolan; J Norman; S L Hoffman
Journal:  Proc Natl Acad Sci U S A       Date:  2001-08-28       Impact factor: 11.205

2.  Induction in humans of CD8+ and CD4+ T cell and antibody responses by sequential immunization with malaria DNA and recombinant protein.

Authors:  Ruobing Wang; Judith Epstein; Yupin Charoenvit; Fe Maria Baraceros; Nancy Rahardjo; Tanya Gay; Jo-Glenna Banania; Rana Chattopadhyay; Patricia de la Vega; Thomas L Richie; Nadia Tornieporth; Denise L Doolan; Kent E Kester; D Gray Heppner; Jon Norman; Daniel J Carucci; Joe D Cohen; Stephen L Hoffman
Journal:  J Immunol       Date:  2004-05-01       Impact factor: 5.422

3.  Heterologous expression of proteins from Plasmodium falciparum: results from 1000 genes.

Authors:  Christopher Mehlin; Erica Boni; Frederick S Buckner; Linnea Engel; Tiffany Feist; Michael H Gelb; Lutfiyah Haji; David Kim; Colleen Liu; Natascha Mueller; Peter J Myler; J T Reddy; Joshua N Sampson; E Subramanian; Wesley C Van Voorhis; Elizabeth Worthey; Frank Zucker; Wim G J Hol
Journal:  Mol Biochem Parasitol       Date:  2006-04-18       Impact factor: 1.759

4.  Plasmodium-specific immunoglobulin E in sera from an area of holoendemic malaria.

Authors:  R S Desowitz
Journal:  Trans R Soc Trop Med Hyg       Date:  1989 Jul-Aug       Impact factor: 2.184

Review 5.  Protein glycosylation in the malaria parasite.

Authors:  D C Gowda; E A Davidson
Journal:  Parasitol Today       Date:  1999-04

6.  Genome-scale protein expression and structural biology of Plasmodium falciparum and related Apicomplexan organisms.

Authors:  Masoud Vedadi; Jocelyne Lew; Jennifer Artz; Mehrnaz Amani; Yong Zhao; Aiping Dong; Gregory A Wasney; Mian Gao; Tanya Hills; Stephen Brokx; Wei Qiu; Sujata Sharma; Angelina Diassiti; Zahoor Alam; Michelle Melone; Anne Mulichak; Amy Wernimont; James Bray; Peter Loppnau; Olga Plotnikova; Kate Newberry; Emayavaram Sundararajan; Simon Houston; John Walker; Wolfram Tempel; Alexey Bochkarev; Ivona Kozieradzki; Aled Edwards; Cheryl Arrowsmith; David Roos; Kevin Kain; Raymond Hui
Journal:  Mol Biochem Parasitol       Date:  2006-11-13       Impact factor: 1.759

7.  The global distribution of clinical episodes of Plasmodium falciparum malaria.

Authors:  Robert W Snow; Carlos A Guerra; Abdisalan M Noor; Hla Y Myint; Simon I Hay
Journal:  Nature       Date:  2005-03-10       Impact factor: 49.962

Review 8.  Malaria: progress, perils, and prospects for eradication.

Authors:  Brian M Greenwood; David A Fidock; Dennis E Kyle; Stefan H I Kappe; Pedro L Alonso; Frank H Collins; Patrick E Duffy
Journal:  J Clin Invest       Date:  2008-04       Impact factor: 14.808

9.  Plasmodium falciparum-specific immunoglobulin G (IgG), IgM, and IgE antibodies in paired maternal-cord sera from east Sepik Province, Papua New Guinea.

Authors:  R S Desowitz; J Elm; M P Alpers
Journal:  Infect Immun       Date:  1993-03       Impact factor: 3.441

10.  Plasmodium chabaudi-infected erythrocytes adhere to CD36 and bind to microvascular endothelial cells in an organ-specific way.

Authors:  M M Mota; W Jarra; E Hirst; P K Patnaik; A A Holder
Journal:  Infect Immun       Date:  2000-07       Impact factor: 3.441

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  24 in total

1.  NIAID workshop on Flavivirus immunity.

Authors:  Alison D Augustine; M Cristina Cassetti; Francis A Ennis; Eva Harris; William H Hildebrand; Patricia M Repik
Journal:  Viral Immunol       Date:  2010-06       Impact factor: 2.257

2.  NIAID workshop on immunity to malaria: addressing immunological challenges.

Authors:  Alison Deckhut Augustine; B Fenton Hall; Wolfgang W Leitner; Annie X Mo; Tonu M Wali; Anthony S Fauci
Journal:  Nat Immunol       Date:  2009-07       Impact factor: 25.606

3.  Analysis of T cell responses to the major allergens from German cockroach: epitope specificity and relationship to IgE production.

Authors:  Carla Oseroff; John Sidney; Victoria Tripple; Howard Grey; Robert Wood; David H Broide; Jason Greenbaum; Ravi Kolla; Bjoern Peters; Anna Pomés; Alessandro Sette
Journal:  J Immunol       Date:  2012-06-15       Impact factor: 5.422

Review 4.  Uncovering the interplay between CD8, CD4 and antibody responses to complex pathogens.

Authors:  Magdalini Moutaftsi; David C Tscharke; Kerrie Vaughan; David M Koelle; Lawrence Stern; Mauricio Calvo-Calle; Francis Ennis; Masanori Terajima; Gerd Sutter; Shane Crotty; Ingo Drexler; Genoveffa Franchini; Jon W Yewdell; Steven R Head; Janice Blum; Bjoern Peters; Alex Sette
Journal:  Future Microbiol       Date:  2010-02       Impact factor: 3.165

5.  Meta-analysis of all immune epitope data in the Flavivirus genus: inventory of current immune epitope data status in the context of virus immunity and immunopathology.

Authors:  Kerrie Vaughan; Jason Greenbaum; Martin Blythe; Bjoern Peters; Alessandro Sette
Journal:  Viral Immunol       Date:  2010-06       Impact factor: 2.257

Review 6.  Design and utilization of epitope-based databases and predictive tools.

Authors:  Nima Salimi; Ward Fleri; Bjoern Peters; Alessandro Sette
Journal:  Immunogenetics       Date:  2010-03-06       Impact factor: 2.846

7.  Peptide binding predictions for HLA DR, DP and DQ molecules.

Authors:  Peng Wang; John Sidney; Yohan Kim; Alessandro Sette; Ole Lund; Morten Nielsen; Bjoern Peters
Journal:  BMC Bioinformatics       Date:  2010-11-22       Impact factor: 3.169

8.  An integrated approach to epitope analysis II: A system for proteomic-scale prediction of immunological characteristics.

Authors:  Robert D Bremel; E Jane Homan
Journal:  Immunome Res       Date:  2010-11-02

9.  Recent advances in B-cell epitope prediction methods.

Authors:  Yasser El-Manzalawy; Vasant Honavar
Journal:  Immunome Res       Date:  2010-11-03

10.  Classification of the universe of immune epitope literature: representation and knowledge gaps.

Authors:  Vince Davies; Kerrie Vaughan; Rohini Damle; Bjoern Peters; Alessandro Sette
Journal:  PLoS One       Date:  2009-09-14       Impact factor: 3.240

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