Literature DB >> 19141877

Stochastic control of metabolic pathways.

Andrea Rocco1.   

Abstract

We study the effect of extrinsic noise in metabolic networks. We introduce external random fluctuations at the kinetic level, and show how these lead to a stochastic generalization of standard metabolic control analysis. While summation and connectivity theorems hold true in the presence of extrinsic noise, control coefficients incorporate its effect through an explicit dependency on the noise intensity. New elasticities and response coefficients are also defined. Accordingly, the concept of control by noise is introduced as a way of tuning the systemic behaviour of metabolisms. We argue that this framework holds for intrinsic noise too, when time-scale separation is present in the system.

Mesh:

Year:  2009        PMID: 19141877     DOI: 10.1088/1478-3975/6/1/016002

Source DB:  PubMed          Journal:  Phys Biol        ISSN: 1478-3967            Impact factor:   2.583


  3 in total

Review 1.  Synthetic biology and regulatory networks: where metabolic systems biology meets control engineering.

Authors:  Fei He; Ettore Murabito; Hans V Westerhoff
Journal:  J R Soc Interface       Date:  2016-04-13       Impact factor: 4.118

2.  Ranking of Reactions Based on Sensitivity of Protein Noise Depends on the Choice of Noise Measure.

Authors:  Sucheta Gokhale; Chetan Gadgil
Journal:  PLoS One       Date:  2015-12-01       Impact factor: 3.240

3.  Noise management by molecular networks.

Authors:  Frank J Bruggeman; Nils Blüthgen; Hans V Westerhoff
Journal:  PLoS Comput Biol       Date:  2009-09-18       Impact factor: 4.475

  3 in total

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