Literature DB >> 19140634

Thermodynamics of G x A mispairs in DNA: continuum electrostatic model.

Julia Berashevich1, Tapash Chakraborty.   

Abstract

An analysis of the stability of a duplex containing G x A mispairs or G x A/A x G tandem during the DNA melting has shown that the duplex stability depends on both DNA sequences and the conformations of the G x A mispairs. The thermodynamics of single pair opening for the G(anti) x A(syn) and G(anti) x A(anti) conformations adopted by a G x A mispair is found to strongly correlate with that of the canonical base pairs, while for the sheared conformation a significant difference is observed.

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Year:  2009        PMID: 19140634     DOI: 10.1063/1.3050107

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  4 in total

1.  Structural destabilization of DNA duplexes containing single-base lesions investigated by nanopore measurements.

Authors:  Qian Jin; Aaron M Fleming; Yun Ding; Cynthia J Burrows; Henry S White
Journal:  Biochemistry       Date:  2013-10-31       Impact factor: 3.162

2.  Sequence-specific single-molecule analysis of 8-oxo-7,8-dihydroguanine lesions in DNA based on unzipping kinetics of complementary probes in ion channel recordings.

Authors:  Anna E P Schibel; Aaron M Fleming; Qian Jin; Na An; Jin Liu; Charles P Blakemore; Henry S White; Cynthia J Burrows
Journal:  J Am Chem Soc       Date:  2011-08-29       Impact factor: 15.419

3.  A mutation-resistant deoxyribozyme OR gate for highly selective detection of viral nucleic acids.

Authors:  Ola Kamar; Sin-Cih Sun; Chieh-Hua Lin; Wan-Yu Chung; Min-Shi Lee; Yu-Chieh Liao; Dmitry M Kolpashchikov; Min-Chieh Chuang
Journal:  Chem Commun (Camb)       Date:  2017-09-21       Impact factor: 6.222

4.  Melting temperature measurement and mesoscopic evaluation of single, double and triple DNA mismatches.

Authors:  Luciana M Oliveira; Adam S Long; Tom Brown; Keith R Fox; Gerald Weber
Journal:  Chem Sci       Date:  2020-07-23       Impact factor: 9.825

  4 in total

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