Literature DB >> 19133795

Systematic first principles parameterization of force fields for metal-organic frameworks using a genetic algorithm approach.

Maxim Tafipolsky1, Rochus Schmid.   

Abstract

A systematic strategy is proposed to derive the necessary force field parameters directly from first principles calculations of nonperiodic model systems to reproduce both the structure and curvature of the reference potential energy surface. The parameters are determined using a genetic algorithm combined with a novel fitness criterion based on a representation of structure and curvature in a set of redundant internal coordinates. Due to the efficiency of this approach it is possible to abandon the need for transferability of the parameters. The method is targeted for the application on metal-organic frameworks (MOFs), where parameters for molecular mechanics force fields are often not available, because of the wide range of possible inorganic fragments involved. The scheme is illustrated for Zn4O-based IRMOF materials on the example of MOF-5. In a "building block" approach parameters are derived for the two model systems basic zinc formate (Zn4O(O2CH)6), and dilithium terephthalate with reference data obtained from density functional theory. The resulting potential gives excellent agreement with the structure, vibrational frequencies, thermal behavior and elastic constants of the periodic MOF-5.

Entities:  

Year:  2009        PMID: 19133795     DOI: 10.1021/jp807487f

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  8 in total

1.  An all-atom force field developed for Zn₄O(RCO₂)₆ metal organic frameworks.

Authors:  Yingxin Sun; Huai Sun
Journal:  J Mol Model       Date:  2014-02-22       Impact factor: 1.810

2.  Flexible Force Field Parameterization through Fitting on the Ab Initio-Derived Elastic Tensor.

Authors:  Jurn Heinen; Nicholas C Burtch; Krista S Walton; David Dubbeldam
Journal:  J Chem Theory Comput       Date:  2017-07-19       Impact factor: 6.006

3.  Force-Field Prediction of Materials Properties in Metal-Organic Frameworks.

Authors:  Peter G Boyd; Seyed Mohamad Moosavi; Matthew Witman; Berend Smit
Journal:  J Phys Chem Lett       Date:  2017-01-03       Impact factor: 6.475

4.  Atomistic Insight Into the Host-Guest Interaction of a Photoresponsive Metal-Organic Framework.

Authors:  Elena Kolodzeiski; Saeed Amirjalayer
Journal:  Chemistry       Date:  2020-01-21       Impact factor: 5.236

Review 5.  QM/MM molecular dynamics studies of metal binding proteins.

Authors:  Pietro Vidossich; Alessandra Magistrato
Journal:  Biomolecules       Date:  2014-07-08

6.  Molecular modeling of zinc paddlewheel molecular complexes and the pores of a flexible metal organic framework.

Authors:  Khalid A H Alzahrani; Robert J Deeth
Journal:  J Mol Model       Date:  2016-03-15       Impact factor: 1.810

7.  Extension of the QuickFF force field protocol for an improved accuracy of structural, vibrational, mechanical and thermal properties of metal-organic frameworks.

Authors:  Louis Vanduyfhuys; Steven Vandenbrande; Jelle Wieme; Michel Waroquier; Toon Verstraelen; Veronique Van Speybroeck
Journal:  J Comput Chem       Date:  2018-02-02       Impact factor: 3.376

Review 8.  On flexible force fields for metal-organic frameworks: Recent developments and future prospects.

Authors:  Jurn Heinen; David Dubbeldam
Journal:  Wiley Interdiscip Rev Comput Mol Sci       Date:  2018-03-25
  8 in total

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